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Report for CCDS18925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18925.1 Public Mus musculus 4 2510039O18Rik 23 108 98 CCDS HistoryNCBI Gene:77034Re-query CCDS DB by CCDS ID:18925.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103232.1 ENSMUSP00000099522.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103232.1Link to Ensembl Protein Viewer:ENSMUSP00000099522.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103232Re-query CCDS DB by Protein ID:ENSMUSP00000099522
Original member Current member NCBI NM_029841.3 NP_084117.2 Accepted alive Link to Nucleotide Sequence:NM_029841.3Link to Protein Sequence:NP_084117.2Re-query CCDS DB by Nucleotide ID:NM_029841Re-query CCDS DB by Protein ID:NP_084117Link to BLAST:NP_084117.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084117.2 634 Q91X21-1 634 100% 0 0

Chromosomal Locations for CCDS 18925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147941025 147942057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147944608 147945461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147946601 147946618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGTGGCTGCAGCAGCGCCTGAAGGGGCTGCCGGGGCTGCTGTCGAGCAGCTGGGCCCGCCGCCTCCTCT
GCCTGCTCGGCCTCTTGGTGCTGCTCCTGTGGTTCGCGAGCTCCGGGGCGCGGCGGGCGGCGGGCGGCCT
GCACCTGCCGTCCTGGGCCCGCAGCGAGCCGGGCGCCGCCGAGCCGTCTGCCTGTCTGGAGGCGGCCACC
CGCGCGTGGCGCGGCCTGCGTGATCGCGGCGAGGCGGTGCCGCTTGGCCCCGGGGTGCCAGCCCTGGTGG
CCAACGGCTTCCTGGCTCTGGACGCCTCCAACAACCGGCTGTGGGTGACGCCCGGAGAGCGGGAGCCTGC
CGTGACGCCGGACTTCGTGCCCTTCGTGCAGCTACGCCCGCTGAATGTGGTGGCCGAGGCTGGAGAGGCG
GTGCTGCTTCTGCGGGAGGGCCTGCTGCGCCGAGTGCGCTGCCTGCAGCTGGGGACCCCGGGCTCGGGCC
CTGCCGCTGGTGTCCCCGGGCCCGCCTCGGCCTCCGGGCTCTCCGCGGGGTCGGGCCGGGACTGCGTGCT
ACTGCAGGAGGACTTCCTGGCGCACCGAGGCCGACCCCACGTCTATCTGCAGCGCATCCAGCTCAACAAT
CCCACGGAGCGCGTGGCCGCGTTGCAGACTGTGGGGCCCACCGCAGGCCCAGTCCCCAAATCCTTCACCA
GCACCCTGGAGAAGGTCGGAGATCACCAGTTTCTCCTCTACTCGGGCCGGTCCACACCCCTTCCATCGGG
GCTGGTGCACTTGGTCGTGGTGACCTCTAAGAAGTTAGTGAACAGGCTCCAGGTGGCTCCCAAGACACAG
CTGGACGAGACGGTGCTGTGGGTGGTGCACATCTCTGGTCCCATCCACCCCCAGGTGCTCAAAAGCAAAG
GAGCCAAGGAGCTCAAGGCGCTGCAGGACTTAGCACGGAAGGAGATGCTGGAGCTGTTGGAGATGCCCGC
CTCGGAGCTGCTTCAGGATCACCAGTACCTCTGGGCCCAGCTCTTCAGTCCCGGTGTGGAGATGAAGAGG
ATCACGGATGCTCACACGCCATCTGGCCTGACCGTGAACCTGACCCTGTACTACATGCTCTCCTGCTCTC
CAGCCCCACTGCTCAGCCCCTCTCTGAGCCACAGGGAACGCGAGCAGATGGAGGCAACGCTCAACTATGA
AGACCACTGCTTCAGTGGCCATGCCACCATGCATGCCGAGAACCTGTGGCCTGGCCAGCTCTCCTCAGTG
CAGCAGATCCTGCAGCTGGCTGACCTGTGGAAGTTGACCCTCCAGAAGCGCGGCTGCAAGGGGCTGGTGA
AGGTTGGCGCTCCGGGCATCCTGCAAGGCATGGTGCTCAGCTTCGGCGGGCTACAGTTCACAGAAAACCA
CCTGCAGTTCCAGGCCGACCCCGAGGTGCTCCACAACAGCTATGCGCTTCACGGCATCCGCTACAAGAAC
GACCACATCAACCTGGCTGTGCTGGTGGACGCTGAGGGCAAGCCCTACCTGCATGTGTCTTTGGAGTCCC
GAGGCCAACCCGTCAAGATCTACGCCTGTGAGGCAGGCTGCCTCCATGACCCCGTAGAGCTGACCTCAGA
GCCTGGAGGCCACACCTTCTCTGTCATGGTGACCCAGCCCATCACACCACTGTTGTACATCTCCACCGAC
CTCACACATCTGCAGGACCTGCGGCACACGCTGCACCTTAAGGCCATCCTGGCCCACGATGAGCACATGG
CCCAGCAGGATCCCGGCCTGCCCTTCCTCTTCTGGTTCAGTGTGGCCTCCCTCATCACCCTCTTCCACCT
CTTCCTCTTTAAACTCATCTATAATGAGTACTGTGGGCCTGGAGCCAAGCCCCTCTTCAGGAGCAAGGAA
GATCCCAGTGTCTGA

Translation (634 aa):
MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFASSGARRAAGGLHLPSWARSEPGAAEPSACLEAAT
RAWRGLRDRGEAVPLGPGVPALVANGFLALDASNNRLWVTPGEREPAVTPDFVPFVQLRPLNVVAEAGEA
VLLLREGLLRRVRCLQLGTPGSGPAAGVPGPASASGLSAGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNN
PTERVAALQTVGPTAGPVPKSFTSTLEKVGDHQFLLYSGRSTPLPSGLVHLVVVTSKKLVNRLQVAPKTQ
LDETVLWVVHISGPIHPQVLKSKGAKELKALQDLARKEMLELLEMPASELLQDHQYLWAQLFSPGVEMKR
ITDAHTPSGLTVNLTLYYMLSCSPAPLLSPSLSHREREQMEATLNYEDHCFSGHATMHAENLWPGQLSSV
QQILQLADLWKLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPEVLHNSYALHGIRYKN
DHINLAVLVDAEGKPYLHVSLESRGQPVKIYACEAGCLHDPVELTSEPGGHTFSVMVTQPITPLLYISTD
LTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKE
DPSV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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