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Report for CCDS50654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50654.1 Public Mus musculus 2 Mpped2 23 108 98 CCDS HistoryNCBI Gene:77015Re-query CCDS DB by CCDS ID:50654.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016530.13 ENSMUSP00000016530.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016530.13Link to Ensembl Protein Viewer:ENSMUSP00000016530.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016530Re-query CCDS DB by Protein ID:ENSMUSP00000016530
Original member Current member EBI ENSMUST00000111063.7 ENSMUSP00000106692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111063.7Link to Ensembl Protein Viewer:ENSMUSP00000106692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111063Re-query CCDS DB by Protein ID:ENSMUSP00000106692
Original member Current member NCBI NM_001143683.2 NP_001137155.1 Accepted alive Link to Nucleotide Sequence:NM_001143683.2Link to Protein Sequence:NP_001137155.1Re-query CCDS DB by Nucleotide ID:NM_001143683Re-query CCDS DB by Protein ID:NP_001137155Link to BLAST:NP_001137155.1
Original member Current member NCBI NM_001356554.1 NP_001343483.1 Accepted alive Link to Nucleotide Sequence:NM_001356554.1Link to Protein Sequence:NP_001343483.1Re-query CCDS DB by Nucleotide ID:NM_001356554Re-query CCDS DB by Protein ID:NP_001343483Link to BLAST:NP_001343483.1
Original member Current member NCBI NM_029837.1 NP_084113.1 Accepted alive Link to Nucleotide Sequence:NM_029837.1Link to Protein Sequence:NP_084113.1Re-query CCDS DB by Nucleotide ID:NM_029837Re-query CCDS DB by Protein ID:NP_084113Link to BLAST:NP_084113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137155.1 294 Q9CZJ0 294 100% 0 0
NP_001343483.1 294 Q9CZJ0 294 100% 0 0
NP_084113.1 294 Q9CZJ0 294 100% 0 0

Chromosomal Locations for CCDS 50654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 106699408 106699535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106744700 106744881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106783633 106783858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106861488 106861603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106864655 106864768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106866948 106867066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCACATGGGATTCCTTCTCAAGGCAAAGTTACCATAACGGTGGATGAGTATAGCTCAAACCCCACCC
AGGCATTCACACACTACAACATCAACCAGAGCAGATTCCAGCCGCCACATGTACATATGGTCGACCCCAT
CCCATATGACACTCCAAAACCAGCGGGCCACACGCGGTTTGTCTGCATCTCAGACACACACTCCAGAACA
GATGGTATCCAGATGCCTTATGGGGACATCCTTCTCCACACAGGCGATTTCACCGAGCTGGGACTGCCCT
CAGAGGTTAAGAAGTTTAATGACTGGTTAGGAAACCTGCCATATGAATATAAAATTGTGATTGCTGGGAA
TCATGAACTGACATTTGATAAGGAATTCATGGCAGACCTCGTTAAACAGGACTACTACCGTTTCCCTTCT
GTGTCCAAATTGAAACCAGAGGACTTTGACAATGTTCAGTCCCTCCTGACAAACAGTATTTACTTGCAAG
ATTCAGAGGTAACCGTGAAAGGATTCAGGATATACGGTGCACCCTGGACCCCGTGGTTTAATGGATGGGG
CTTTAACCTACCCAGAGGCCAGTCTCTGCTGGACAAATGGAACCTAATCCCTGAGGGCATCGACATACTC
ATGACACACGGACCTCCTCTAGGTTTTCGAGACTGGGTTCCAAAGGAACTTCAAAGGGTGGGCTGCGTGG
AGCTCTTAAACACAGTCCAGAGGCGCATTCGGCCCAAGCTCCATGTGTTCGGTGGGATTCACGAAGGGTA
CGGCATCATGACCGACGGTTACACCACCTACATCAATGCCTCAACCTGTACAGTCAGCTTTCAACCGACC
AACCCTCCAATCATATTTGACCTTCCAAACCCACAGGGCTCCTAA

Translation (294 aa):
MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTHSRT
DGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPS
VSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGIDIL
MTHGPPLGFRDWVPKELQRVGCVELLNTVQRRIRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPT
NPPIIFDLPNPQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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