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Report for CCDS25200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25200.1 Public Mus musculus 11 Rnft1 23 108 98 CCDS HistoryNCBI Gene:76892Re-query CCDS DB by CCDS ID:25200.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020827.6 ENSMUSP00000020827.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020827.6Link to Ensembl Protein Viewer:ENSMUSP00000020827.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020827Re-query CCDS DB by Protein ID:ENSMUSP00000020827
Original member Current member NCBI NM_029788.5 NP_084064.1 Accepted alive Link to Nucleotide Sequence:NM_029788.5Link to Protein Sequence:NP_084064.1Re-query CCDS DB by Nucleotide ID:NM_029788Re-query CCDS DB by Protein ID:NP_084064Link to BLAST:NP_084064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084064.1 395 Q9DCN7 395 100% 0 0

Chromosomal Locations for CCDS 25200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86486112 86486505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86486656 86486732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86489067 86489167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86490358 86490511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86491679 86491837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86493161 86493226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86495228 86495329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86495821 86495955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCAAGCCAGCTGTAACCAACTGCATGATCCTCCGGGCACTGCACATGAAGATGCTGCAGCCTCCCCGT
GTGGTCATTCAAGATCAACAGAAGGTTCCCTTCACCCTGGGGATGTACATATCCAAATAAACTCCGGACC
AAAAGAATATTCTGAAAATCCAAGCTCTAGAAATCCCAGGTCAGGCGTCTGTACTTGTGCCCATGGATGT
GTGCATGGTCGTTTCCGGAGTTACTCCCACAGTGAAGCAAGACCACCTGATGACTTTGCTACAGAGTCTG
GGGAACATGGAAGTGGCTCCTTCTCAGAATTCCGCTATCTCTTCAAGTGGTTGCAAAAAAGTCTTCCTTA
TATTTTAATTCTGGGTATTAAACTTGTTATGCAGCATATAACAGGAATTTCTCTTGGAATTGGGCTGCTA
ACAACTTTTATGTATGCAAACAAAAGCATTGTAAATCAGGTTTTTCTAAGAGAACGGTCATCAAAGCTCC
GCTGTGCTTGGTTACTGGTGTTCCTGGCAGGTTCCTCCGTCCTCTTATATTACACTTTTCATTCTCAGTC
ACTTCATTACAGCTTAATTTTCTTAAATCCTACACTCGAACAGTTGAGCTTCTGGGAAGTTCTTTGGATT
GTTGGAATTACAGACTTCATTCTGAAATTCTTTTTCATGGGTTTAAAATGCCTGATTTTATTGGTGCCTT
CTTTCATCATGCCTTTTAAATCAAAGGGATATTGGTACATGCTTTTAGAAGAATTGTGTCAGTATTACCG
AATTTTTGTTCCTATACCAGTTTGGTTTCGGTACCTTATAAGCTACGGGGAGTTTGGTAATGTAACTACA
TGGAGTCTTGGGATATTGCTGGCTTTACTCTACCTCATACTAAAACTTTTGGACTTTTTTGGACACTTGA
GAACTTTCAGACAGGTCTTACGAGTATTTTTTACACGACCGAGTTATGGAGTGCCTGCCAGCAAGAGACA
GTGTTCAGATATGGATGGTATTTGTACAATATGTCAAGCGGAATTTCAGAAGCCAGTTCTTCTCTTTTGT
CAGCATATATTCTGTGAAGAATGTATCACCTTATGGTTTAACAGAGAGAAAACATGTCCACTGTGCAGAA
CTGTGATTTCAGAATGTATAAACAAATGGAAAGATGGGGCCACTTCATCTCACCTCCAGATGTACTAA

Translation (395 aa):
MQASCNQLHDPPGTAHEDAAASPCGHSRSTEGSLHPGDVHIQINSGPKEYSENPSSRNPRSGVCTCAHGC
VHGRFRSYSHSEARPPDDFATESGEHGSGSFSEFRYLFKWLQKSLPYILILGIKLVMQHITGISLGIGLL
TTFMYANKSIVNQVFLRERSSKLRCAWLLVFLAGSSVLLYYTFHSQSLHYSLIFLNPTLEQLSFWEVLWI
VGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRIFVPIPVWFRYLISYGEFGNVTT
WSLGILLALLYLILKLLDFFGHLRTFRQVLRVFFTRPSYGVPASKRQCSDMDGICTICQAEFQKPVLLFC
QHIFCEECITLWFNREKTCPLCRTVISECINKWKDGATSSHLQMY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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