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Report for CCDS24496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24496.1 Public Mus musculus 11 Mtif2 23 108 98 CCDS HistoryNCBI Gene:76784Re-query CCDS DB by CCDS ID:24496.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020749.12 ENSMUSP00000020749.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020749.12Link to Ensembl Protein Viewer:ENSMUSP00000020749.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020749Re-query CCDS DB by Protein ID:ENSMUSP00000020749
Original member Current member EBI ENSMUST00000093239.10 ENSMUSP00000090926.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093239.10Link to Ensembl Protein Viewer:ENSMUSP00000090926.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093239Re-query CCDS DB by Protein ID:ENSMUSP00000090926
Original member Current member NCBI NM_001282118.1 NP_001269047.1 Accepted alive Link to Nucleotide Sequence:NM_001282118.1Link to Protein Sequence:NP_001269047.1Re-query CCDS DB by Nucleotide ID:NM_001282118Re-query CCDS DB by Protein ID:NP_001269047Link to BLAST:NP_001269047.1
Original member Current member NCBI NM_133767.3 NP_598528.2 Accepted alive Link to Nucleotide Sequence:NM_133767.3Link to Protein Sequence:NP_598528.2Re-query CCDS DB by Nucleotide ID:NM_133767Re-query CCDS DB by Protein ID:NP_598528Link to BLAST:NP_598528.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269047.1 727 Q91YJ5 727 100% 0 0
NP_598528.2 727 Q91YJ5 727 100% 0 0

Chromosomal Locations for CCDS 24496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 29529936 29530154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29530581 29530692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29533226 29533397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29533832 29533992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29535090 29535266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29536833 29536972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29538669 29538793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29540068 29540272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29540609 29540861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29541341 29541481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29542345 29542509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29544270 29544410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29544913 29545085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGAACCAGAAGCTACTGAAGTTGGAAAACTTGCTACGATTTCATACTATTTGTAGGCAGGTGCACAGCC
CAAGTCAAAGAAGACTCTTAGCATGGTGTAGACATGGGTTTGCACCGGCTTCCTCAGTGTGGAGAGATCT
GCTGGGTGCCCGGTCCTGGCAGACAGACATGCTCATTGGTTCAGCTTTGCATCAGCACAGACTTCTTGTA
ACAAAGAAGGAAAAAAGACCACCAAGATCTCAGTTGTCTCCAGTAAAAACTAAAAAAGAGGTAGAAGTAT
GGGTTGGAATGACTGTTGAAGATCTAGCCAGTGCCATGGCAAAAGATATAGATTGTGTATACGAAGCTTT
ATTGAACACTGCCATTGACGTAGATTCATTAGAAGCAAACTCACATTTAGATGAAGTCTGGATCAAAGAA
GTTATAAAGAAGGCAGGAATGAAGCTGAAATGGAGCAAATTAAAACAGGAAAGAATTAGAGAAAATAAAG
ATGCTGTGAGAAGGCCTGGGACAGATCCAGCTTTATTAAAACCAAGGTCCCCAGTTGTTACTGTAATGGG
CCATGTTGATCATGGGAAAACGACCTTACTTGACAAACTTCGAGAAACTCAAGTTGCAGCGATGGAAGTC
GGAGGCATCACTCAACACATTGGTGCTTTTCTTGTCTCTCTGCCTTCTGGAGAAAAGATAACTTTTCTTG
ATACTCCTGGACATGCTGCCTTCTCAGCAATGAGAGCCAGAGGAGCTCAGGTCACCGACATTGTTGTGTT
GGTTGTAGCTGCAGATGATGGGGTAATGAAACAAACTGTGGAATCCATTCAGCATGCAAAAGATGCAGAA
GTTCCTATTATCCTTGCAATCAATAAGTGCGACAAGACAGATGCTGATCCTGAAAAGGTGAAAAAAGAGC
TCCTAGCTTACGATGTGGTGTGTGAAGAGTATGGTGGTGATGTTCAAGCAGTGCACGTCTCTGCACTTAC
GGGCGATAACCTGATGGCTTTGGCAGAAGCAACAATTGCTCTCGCAGAAATCTTGGAACTGAAAGCAGAT
CCCACCGGTCCAGTGGAAGGAACAGTAATAGAGTCTTTCACAGACAAAGGAAGAGGTCCTGTTACAACAG
CTATAATTCAAAGAGGAACTCTGAGAAAAGGCTCAATTCTAGTTGCTGGGAAGAGTTGGGCAAAAGTTCG
ACTAATATTTGATGAAAATGGAAAAATACTTAATGAGGCCTATCCCAGCATGCCAGTGGGAATCATAGGC
TGGAGAGACCTTCCTTCTGCAGGAGATGAAATTCTTGAAGTAGAATCTGAGCCAAGGGCCCGTGAAGTTA
TTGAATGGAGGAAGTCTGAGCAAAAAGAAGAAAAAGGCAAAGATGACCTGAAAATAATGGAAGAAAAGCG
AAGGGAACACCAAGAAGCGCATCGGAAAGCCCGTGAGAAGTATGGCAGTCTGCACTGGAAAGAGAGATCA
TATATAAAGTTCCTTGAAAGGAAACAACAGAGACCCTTAAAGCCCAAAGAAAAGGTAGAAAGGCAATCAA
ATGTACTTCCTATAATTATTAAAGGTGACGTTGATGGGTCTGTGGAGGCCATCTTGAACCTTCTGGATAC
CTACGATGCTTCCCACGAATGTGAACTCGAATTAGTACATTTTGGATTGGGTGACATCAGTGAAAATGAT
GTTACCTTTGCTGAGACATTTGATGGTGTTATTTATGGTTTTAATGTGGAGGCAGGCAGTGCTATTCAGC
AGTCAGCTGCACAAAAGGGAGTTAAGATTAAACTTCACAAAATCATCTACCATCTTATTGAAGATTTGCA
GGAGGAACTAAGCAGCAGATTGCCCCACACACTGGAGGAGTACCCAATAGGTGAGGCTTCTATACTAGCT
ACCTTCACTGTAACAGAAGGGAAGAAAAAAATTCCTGTTGCTGGCTGCAGAGTTCAAAAGGGACAATTAG
AAAGACATAAGAAGTTTAAATTAATCCGAAACGGCCAAGTTATTTGGAAGGGATCATTAACCTCTCTGAA
ACACCATAAAGATGACATTTCAGTTATAAAAACTGGTATGGACTGTGGTCTTAGTTTAGATGAAGAAAAA
GTCGAATTCAAACCGGGAGATCAAGTCATTTGTTATGAAGAAAATAAAGTTCCAACTAAGACTTCCTGGG
ATCCAGGATTTTAA

Translation (727 aa):
MNQKLLKLENLLRFHTICRQVHSPSQRRLLAWCRHGFAPASSVWRDLLGARSWQTDMLIGSALHQHRLLV
TKKEKRPPRSQLSPVKTKKEVEVWVGMTVEDLASAMAKDIDCVYEALLNTAIDVDSLEANSHLDEVWIKE
VIKKAGMKLKWSKLKQERIRENKDAVRRPGTDPALLKPRSPVVTVMGHVDHGKTTLLDKLRETQVAAMEV
GGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAE
VPIILAINKCDKTDADPEKVKKELLAYDVVCEEYGGDVQAVHVSALTGDNLMALAEATIALAEILELKAD
PTGPVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLIFDENGKILNEAYPSMPVGIIG
WRDLPSAGDEILEVESEPRAREVIEWRKSEQKEEKGKDDLKIMEEKRREHQEAHRKAREKYGSLHWKERS
YIKFLERKQQRPLKPKEKVERQSNVLPIIIKGDVDGSVEAILNLLDTYDASHECELELVHFGLGDISEND
VTFAETFDGVIYGFNVEAGSAIQQSAAQKGVKIKLHKIIYHLIEDLQEELSSRLPHTLEEYPIGEASILA
TFTVTEGKKKIPVAGCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEK
VEFKPGDQVICYEENKVPTKTSWDPGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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