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Report for CCDS20225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20225.1 Public Mus musculus 6 Thnsl2 23 108 98 CCDS HistoryNCBI Gene:232078Re-query CCDS DB by CCDS ID:20225.1Re-query CCDS DB by GeneID:232078See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074241.8 ENSMUSP00000073861.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074241.8Link to Ensembl Protein Viewer:ENSMUSP00000073861.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074241Re-query CCDS DB by Protein ID:ENSMUSP00000073861
Original member Current member EBI ENSMUST00000160918.7 ENSMUSP00000124423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160918.7Link to Ensembl Protein Viewer:ENSMUSP00000124423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160918Re-query CCDS DB by Protein ID:ENSMUSP00000124423
Original member Current member NCBI NM_001033929.2 NP_001029101.1 Accepted alive Link to Nucleotide Sequence:NM_001033929.2Link to Protein Sequence:NP_001029101.1Re-query CCDS DB by Nucleotide ID:NM_001033929Re-query CCDS DB by Protein ID:NP_001029101Link to BLAST:NP_001029101.1
Original member Current member NCBI NM_178413.5 NP_848500.3 Accepted alive Link to Nucleotide Sequence:NM_178413.5Link to Protein Sequence:NP_848500.3Re-query CCDS DB by Nucleotide ID:NM_178413Re-query CCDS DB by Protein ID:NP_848500Link to BLAST:NP_848500.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029101.1 483 Q80W22 483 100% 0 0
NP_848500.3 483 Q80W22 483 100% 0 0

Chromosomal Locations for CCDS 20225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71128630 71128852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71129212 71129363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71131648 71131773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71131875 71132023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71134081 71134311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71138651 71138803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71139749 71139943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71141220 71141442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGTGGTACACTAGCACCCGGGGAATGGCCCCACGGGTCAACTTTGAGGGGGCCCTCTTCTCTGGTTATG
CACCAGATGGGGGCCTCTATATGCCAGAGGAGCTCCCTAGGCTGGACGAAGAGACCCTGCGTCACTGGAG
CACGCTGTCCTATCGCAGCCTGGTGAAGGAGCTGTGTGCTCTCTTCATTGGTCTGGAGCTTATTCCAAGA
CATGACTTAAATGATCTGATTGACCGAGCCTTCAGCAGATTCCGCCACAGAAATGTGGTCCATCTATGCA
AGCTGAAGAATGGACTGAACATACTGGAGTTGTGGCATGGGGTCACATATGCCTTTAAGGACCTGTCCCT
GTCCTGCACAGCACAGTTCCTGCAGTACTTCCTGGAGAAGAAGAAGAAGCATGTCACCATTGTTGTGGGA
ACTTCTGGGGACACGGGAAGTGCTGCCATTGAGAGTGTTCAAGGATCCAAGAATGTGGACATTATTGTTC
TGTTGCCCAAAGGCCATTGCTCAAAGATCCAGGAGCTCCAGATGACAACGGTGTTAAAGGAGAACGTTCA
TGTGTTTGAAGTGGAAGGAAACAGCGATGAGCTTGACGAACCCATCAAGGCCGTGTTTGCTGATGTGGCC
TTTGTCCAGAGGCACAATGTGATGAGCTTGAACTCCATCAACTGGTCTCGGGTCCTGGTGCAGATGGCAC
ACCACTTCTTCGCTTATTTCCAGTGTACACCATCCTTGGATACGCACCCCCTGCCCACAGTGGAGGTGGT
AGTGCCGACGGGAGCTGGGGGTAACCTTGCAGCTGGGTGCATTGCTCAGAAGATGGGCCTGCCTATCTGT
CTGGTTGTGGCAGTGAACCGCAACGACATCATTCACAGGACTGTCCAGAAGGGAGACTTCTCTCTGTGTG
AGGTTCTCAGAACAACCCTGGCATCTGCTATGGACATTCAGGTTCCCTACAACATGGAGAGGATCTTCTG
GCTGCTCTCTGGCTCTGACAGCCAGACAACAAGAGCCCTCATGGAACAGTTTGAAAGAACCCAAAGTCTG
CAGCTACCCAAGGACCTACATAACAAGCTTTCAGAGGCAGTGACATCTGAGTCTGTGACTGATGAGGCCA
TCACCCAGACTATGGCCCGCTGCTGGGAGGAAAACCAGTACCTACTGTGCCCCCACTCGGCCACAGCGGT
GAACTACCATTACCAGCAGACTGACAGTGGACAGTCCAGCATCAGGTGCTGCCTGGCCTCTGCCTCAGCA
GTCAAATTCCCAGAAGCAGTCCAGGCGGCTGGGCTGACCCCAGAGACTCCCGCAGAGATCCTGGCCCTGG
AGCACAAGGAGACACGCTGTATCCCAATGCGGAGAGGAGATGACTGGACACAGATGCTGCGGGTCACCAT
TGAGGGCCTGTCCCAGCGGTGGAAAGATTGTGTAGTGAACCCCTCAGAATAG

Translation (483 aa):
MWYTSTRGMAPRVNFEGALFSGYAPDGGLYMPEELPRLDEETLRHWSTLSYRSLVKELCALFIGLELIPR
HDLNDLIDRAFSRFRHRNVVHLCKLKNGLNILELWHGVTYAFKDLSLSCTAQFLQYFLEKKKKHVTIVVG
TSGDTGSAAIESVQGSKNVDIIVLLPKGHCSKIQELQMTTVLKENVHVFEVEGNSDELDEPIKAVFADVA
FVQRHNVMSLNSINWSRVLVQMAHHFFAYFQCTPSLDTHPLPTVEVVVPTGAGGNLAAGCIAQKMGLPIC
LVVAVNRNDIIHRTVQKGDFSLCEVLRTTLASAMDIQVPYNMERIFWLLSGSDSQTTRALMEQFERTQSL
QLPKDLHNKLSEAVTSESVTDEAITQTMARCWEENQYLLCPHSATAVNYHYQQTDSGQSSIRCCLASASA
VKFPEAVQAAGLTPETPAEILALEHKETRCIPMRRGDDWTQMLRVTIEGLSQRWKDCVVNPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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