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Report for CCDS19035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19035.1 Public Mus musculus 4 Mib2 23 108 98 CCDS HistoryNCBI Gene:76580Re-query CCDS DB by CCDS ID:19035.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103176.9 ENSMUSP00000099465.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103176.9Link to Ensembl Protein Viewer:ENSMUSP00000099465.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103176Re-query CCDS DB by Protein ID:ENSMUSP00000099465
Original member Current member NCBI NM_001256108.2 NP_001243037.2 Accepted alive Link to Nucleotide Sequence:NM_001256108.2Link to Protein Sequence:NP_001243037.2Re-query CCDS DB by Nucleotide ID:NM_001256108Re-query CCDS DB by Protein ID:NP_001243037Link to BLAST:NP_001243037.2
Original member Current member NCBI NM_001369162.1 NP_001356091.1 Accepted alive Link to Nucleotide Sequence:NM_001369162.1Link to Protein Sequence:NP_001356091.1Re-query CCDS DB by Nucleotide ID:NM_001369162Re-query CCDS DB by Protein ID:NP_001356091Link to BLAST:NP_001356091.1
Original member Current member NCBI NM_001369163.1 NP_001356092.1 Accepted alive Link to Nucleotide Sequence:NM_001369163.1Link to Protein Sequence:NP_001356092.1Re-query CCDS DB by Nucleotide ID:NM_001369163Re-query CCDS DB by Protein ID:NP_001356092Link to BLAST:NP_001356092.1
Original member Current member NCBI NM_145124.3 NP_660106.2 Accepted alive Link to Nucleotide Sequence:NM_145124.3Link to Protein Sequence:NP_660106.2Re-query CCDS DB by Nucleotide ID:NM_145124Re-query CCDS DB by Protein ID:NP_660106Link to BLAST:NP_660106.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243037.2 921 Q8R516-2 921 100% 0 0
NP_001356091.1 921 Q8R516-2 921 100% 0 0
NP_001356092.1 921 Q8R516-2 921 100% 0 0
NP_660106.2 921 Q8R516-2 921 100% 0 0

Chromosomal Locations for CCDS 19035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155654755 155654993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155655105 155655170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155655252 155655439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155655522 155655700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155656072 155656305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155656394 155656520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155656646 155656806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155656913 155657069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155657166 155657314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155657389 155657522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155657598 155657760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155657855 155657959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155659123 155659265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155659388 155659582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155659678 155659784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155660850 155661021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155661106 155661352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGGACCTGGACCCCCATGCAGGTGTGCAGGTGGGCATGCGTGTGGTACGCGGAATGGACTGGAAATGGG
GCCAGCAGGATGGAGGTGAGGGCGGTGTGGGCACCGTGGTGGAGCTTGGCCGCCATGGCAGCCCCTCGAC
CCCCGACCGTACAGTTGTCGTTCAGTGGGACCAGGGCACACGTACCAACTATCGAGCTGGCTACCAAGGT
GCCCATGACCTGTTGCTCTATGACAACGCCCAAATCGGTATCCGCCACCCCAATATCATCTGTGACTGCT
GCAAGAAACATGGGCTTCGGGGCATGCGTTGGAAGTGCCGCGTCTGCTTTGACTATGACCTCTGCACACA
GTGCTACATGCACAACAAGCATGACCTGACCCATGCCTTCGAGCGCTATGAGACATCTCACTCACGCCCG
GTTACGCTGAGCCCCCGACAGGGCCTCCCTCGGATCCCACTGAGGGGCATCTTTCAAGGAGCTAAGGTGG
TACGAGGCCCTGACTGGGAATGGGGCTCACAAGATGGAGGGGAAGGCAAGACAGGTCGTGTGGTGGACAT
CCGTGGCTGGGATGTGGAGACAGGCCGAAGTGTGGCCAGTGTGACGTGGGCAGATGGAACCACGAACGTG
TACCGAGTGGGCCACAAGGGCAAGGTGGATCTCAGATGTGTTGGTGAGGCAGCTGGCGGCTTTTACTACA
AGGAGCACCTCCCAAAGCTTGGCAAGCCAGCAGAGCTGCAGCGCAGGGTGAGTGCTGATGGCCAGCCCTT
CCAGCGTGGGGACAAGGTCAAGTGTCTGCTGGACACAGATGTCCTAAGGGATATGCAAGAAGGCCATGGT
GGCTGGAACCCTAGGATGGCAGAGCACAACAGCTTCTGGGTGGGTGATGTGGTCCGGGTCATCGGTGACC
TTGACACTGTGAAGCGACTTCAGGCCGGACATGGTGAATGGACCGACGACATGGCTCCCGCCCTGGGCCG
AGTGGGGAAAGTGGTGAAGGTGTTTGGAGATGGAAACTTGCGTGTGGCGGTTGGCGGTCAGCGGTGGACC
TTCAGCCCCTCTTGCCTAGTGGCCTACCGGCCTGAGGAAGACGCCAACCTGGATGTGGCTGAGCGTGCCA
GAGAGAACAAAAGCTCACTGAGTGTGGCCCTGGACAAGCTTCGGACCCAGAAGAGTGACCCAGAGCACCC
GGGGAGGCTGGTAGTAGAGGCCGCACTAGGAAATGTAGCCCGGGCTCTAGATCTTCTGCGGAGGCATCCA
GAGCAGGTGGACACCAAGAACCAGGGTAGAACTGCCCTGCAGGTGGCTGCTTACCTGGGCCAGGTAGAGC
TGGTGCGGCTGCTGCTGCAGGCAAGAGCAAGTATGGACCTGCCGGATGATGAGGGCAACACTGTGCTGCA
CTACACAGCCATGGGGAACCAGCCTGAGGCCACAAGGGTGCTCCTGAGTGCAGGGTGTGCAGTGGATGCT
CGGAATGGCACACGCAGCACAGCCCTACATGTGGCTGTACAGAGGGGCTTCCTAGAGGTGGTAAAGATCC
TGTGTGAACGTGGTTGTGATGTCAACTTGCCGGATGCGCATGCAGACACACCCCTGCATTCTGCCATCTC
TGCTGGTGCTGGTGCCAGCAGCATTGTTGAAGTCCTCACCGAGGTCCCTGGCATCGATGTCACTGCTACC
AATAGCCAGGGCTTCACACTGCTACACCATGCATCCCTCAAGGGCCATGTGCTAGCAGTCAGGAAGATTC
TGGCAAGGGCCCGGCAGCTGGTGGATGCCAAGAAGGAGGATGGCTTTACCGCACTGCATCTGGCAGCCCT
CAACAACCACCGGGAGGTGGCCCAGGTCCTAATCCGAGAGGGTCGCTGTGATGTGAATGTGCGGAACCGG
AAGCTTCAGTCTCCACTTCATCTGGCTGTACAGCAGGCCCACCTGGGGCTGGTACCGCTGCTAGTGGACG
CAGGCTGCAGTGTCAACACGGAGGACGAGGAGGGTGACACGGCCCTGCATGTGGCACTACAGCGTCACCA
GCTGTTGCCCCTTGTGGCTGACAGGGCTGGGGGAGACCCAGGGCCCTTGCAGCTGCTGTCAAGGCTACAG
GCCTCAGGCCTCCCAGGCTGCACAGAGTTGACTGTAGGCGCTGCAGTGGCCTGCTTCCTGGCGTTGGAGG
GTGCTGATGTGAGCTACGCAAACCACCGCGGCCGGAGCCCACTGGACCTGGCCACAGAGGGCCGAGTGCT
CAAGGCCTTGCAGGGCTGTGCCCAGCGCTTCAGGGAGCGACAGGCAGGTGGCGGTGGGGGTGTGCCCCCG
GGCCCCCGGCATGTGCTGAGTACTCCTAACACCGTGACGAACCTGCACGTGTCTGGCACGGCAGGGCCAG
AAGCTGCCGAGTGCCTGGTGTGCTCGGAGCTGGCATTGCTAATTCTGTTCTCACCGTGTCAGCACCGCAC
AGTGTGTGAGGAGTGCGCTCGAAGGATGAAGAAGTGTATCAGGTGCCAGGTGGTCATCAGCAAGAAGCTC
CGCCCAGACGGCTCAGAGGTGGTAAATGCCATCCAGGTGCCCGGCCCGCCTCGGCAACTGGTGGAGGAGC
TACAGAGCCGCTACAGGCAGATGGAGGAGCGCATCACCTGCCCCATCTGCATCGACAGCCACATCCGCCT
GGTGTTCCAGTGCGGCCATGGAGCGTGCGCGCCCTGTGGCGCCGCGCTTAACGCCTGCCCCATCTGCCGC
CAGCCCATCCGCGACCGCATTCAGATCTTCGTGTGA

Translation (921 aa):
MDLDPHAGVQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG
AHDLLLYDNAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAFERYETSHSRP
VTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVVDIRGWDVETGRSVASVTWADGTTNV
YRVGHKGKVDLRCVGEAAGGFYYKEHLPKLGKPAELQRRVSADGQPFQRGDKVKCLLDTDVLRDMQEGHG
GWNPRMAEHNSFWVGDVVRVIGDLDTVKRLQAGHGEWTDDMAPALGRVGKVVKVFGDGNLRVAVGGQRWT
FSPSCLVAYRPEEDANLDVAERARENKSSLSVALDKLRTQKSDPEHPGRLVVEAALGNVARALDLLRRHP
EQVDTKNQGRTALQVAAYLGQVELVRLLLQARASMDLPDDEGNTVLHYTAMGNQPEATRVLLSAGCAVDA
RNGTRSTALHVAVQRGFLEVVKILCERGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTAT
NSQGFTLLHHASLKGHVLAVRKILARARQLVDAKKEDGFTALHLAALNNHREVAQVLIREGRCDVNVRNR
KLQSPLHLAVQQAHLGLVPLLVDAGCSVNTEDEEGDTALHVALQRHQLLPLVADRAGGDPGPLQLLSRLQ
ASGLPGCTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEGRVLKALQGCAQRFRERQAGGGGGVPP
GPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSELALLILFSPCQHRTVCEECARRMKKCIRCQVVISKKL
RPDGSEVVNAIQVPGPPRQLVEELQSRYRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICR
QPIRDRIQIFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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