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Report for CCDS48851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48851.1 Public Mus musculus 11 Rflnb 23 108 98 CCDS HistoryNCBI Gene:76566Re-query CCDS DB by CCDS ID:48851.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021207.6 ENSMUSP00000021207.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021207.6Link to Ensembl Protein Viewer:ENSMUSP00000021207.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021207Re-query CCDS DB by Protein ID:ENSMUSP00000021207
Original member Current member NCBI NM_029658.1 NP_083934.1 Accepted alive Link to Nucleotide Sequence:NM_029658.1Link to Protein Sequence:NP_083934.1Re-query CCDS DB by Nucleotide ID:NM_029658Re-query CCDS DB by Protein ID:NP_083934Link to BLAST:NP_083934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083934.1 216 Q5SVD0 216 100% 0 0

Chromosomal Locations for CCDS 48851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76021910 76022240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76024948 76025057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76027428 76027637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGTGGGCCGGCTGAGCCTGCAGGATGTCCCTGAACTCGTGGACACGAAGAAAAAAGGCGACGGCGTCC
TGGACAGCCCGGACTCGGGGCTGCCCCCAAGCCCTAGCCCCAGCCACTGGGGGCTCGCAGCGACGGCGGG
CGGCGGTGGGGAGCGCGCTCCGGTCGCAGGGACGCTGGAGCCCGATGCGGCGGTGACCCCTATAGTCCCG
AACCCAGCATCTCTGACCCACTCGCTAGCTGCCATCTGCTCACCGAGACTCTGTCCCCTGTCCTTCGGCG
AAGGAGTTGAGTTTGACCCCTTGCCACCAAAGGAAATAAAGTATACCTCCTCAGTCAAGTATGACTCTGA
GCGGCACTTCATCGATGATGTACAGATGCCCCTGGGTCTGGTGGTGGCTTCCTGCAGCCAGACAGTCACC
TGTATCCCCAACTGCACTTGGCGAAACTATAAGGCGGAAGTGCGCTTCGAGCCACGCCCCAAGCCCGCGC
GTTTCCTCAGCACCACCATCGTCTACCCCAAGTACCCCAAAACCGTCTACACCACCACTCTGGATTACAA
CTGCCACAAGAAGCTGAGGAGGTTTCTGTCCAGTGTGGAGCTCGAGGCCACGGAGTTCCTGGGCAGCGAT
GGGCTAGCCGATGAATGTTGA

Translation (216 aa):
MVGRLSLQDVPELVDTKKKGDGVLDSPDSGLPPSPSPSHWGLAATAGGGGERAPVAGTLEPDAAVTPIVP
NPASLTHSLAAICSPRLCPLSFGEGVEFDPLPPKEIKYTSSVKYDSERHFIDDVQMPLGLVVASCSQTVT
CIPNCTWRNYKAEVRFEPRPKPARFLSTTIVYPKYPKTVYTTTLDYNCHKKLRRFLSSVELEATEFLGSD
GLADEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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