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Report for CCDS16465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16465.1 Public Mus musculus 2 Commd9 23 108 98 CCDS HistoryNCBI Gene:76501Re-query CCDS DB by CCDS ID:16465.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028584.7 ENSMUSP00000028584.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028584.7Link to Ensembl Protein Viewer:ENSMUSP00000028584.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028584Re-query CCDS DB by Protein ID:ENSMUSP00000028584
Original member Current member NCBI NM_029635.3 NP_083911.1 Accepted alive Link to Nucleotide Sequence:NM_029635.3Link to Protein Sequence:NP_083911.1Re-query CCDS DB by Nucleotide ID:NM_029635Re-query CCDS DB by Protein ID:NP_083911Link to BLAST:NP_083911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083911.1 198 Q8K2Q0 198 100% 0 0

Chromosomal Locations for CCDS 16465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 101886269 101886319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101895135 101895260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101897040 101897179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101898868 101898902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101899869 101899972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101900928 101901068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCGGCCTTGACAGCAGAGCATTTCGTGGCGCTCCAGAGCCTACTGAAGGCCTCCTCAAAAGATGTTG
TCCGACAACTGTGCCAAGAAAGCTTCTCCAGTTCATGCCTTGACTCAGAAAGCCTCCTAGATAAGACGTG
CTCCAGCTTGTCTGTGCCCCAGGGGGAGGCAGCGCAACTGCTGCAGGCTCTGCACCACTTCACCAGGCTG
GTGGCCTTCCGTGACCTGTCCTCTGCTGAGGCGATTCTGGCTCTCTTTCCGGAAAATTTCCACCAAAACC
TCAAAAACCTGCTGACAAAAATCATCGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCA
GATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAGAGTGGACATCAAAACCTCCTCTGACAACATCAGC
CGCATGGCTGTCCCCACCTGCCTGCTCCAGATGAAGATCCAGGAGGATCCTAGTCTGTGTGGAGAGAAAC
CCTCCATCTCGGCTGTGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTCG
CATTCGGGACCAGCTTTCTGCTGTAGCTAATAAATAA

Translation (198 aa):
MAALTAEHFVALQSLLKASSKDVVRQLCQESFSSSCLDSESLLDKTCSSLSVPQGEAAQLLQALHHFTRL
VAFRDLSSAEAILALFPENFHQNLKNLLTKIIVEHISTWRAEAQANQISLPRLVDLDWRVDIKTSSDNIS
RMAVPTCLLQMKIQEDPSLCGEKPSISAVTMELSKETLDTMLDGLGRIRDQLSAVANK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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