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Report for CCDS29902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29902.1 Public Mus musculus 19 Smndc1 23 108 98 CCDS HistoryNCBI Gene:76479Re-query CCDS DB by CCDS ID:29902.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025997.6 ENSMUSP00000025997.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025997.6Link to Ensembl Protein Viewer:ENSMUSP00000025997.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025997Re-query CCDS DB by Protein ID:ENSMUSP00000025997
Original member Current member EBI ENSMUST00000237529.1 ENSMUSP00000157540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237529.1Link to Ensembl Protein Viewer:ENSMUSP00000157540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237529Re-query CCDS DB by Protein ID:ENSMUSP00000157540
Original member Current member NCBI NM_001356986.1 NP_001343915.1 Accepted alive Link to Nucleotide Sequence:NM_001356986.1Link to Protein Sequence:NP_001343915.1Re-query CCDS DB by Nucleotide ID:NM_001356986Re-query CCDS DB by Protein ID:NP_001343915Link to BLAST:NP_001343915.1
Original member Current member NCBI NM_172429.3 NP_766017.1 Accepted alive Link to Nucleotide Sequence:NM_172429.3Link to Protein Sequence:NP_766017.1Re-query CCDS DB by Nucleotide ID:NM_172429Re-query CCDS DB by Protein ID:NP_766017Link to BLAST:NP_766017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343915.1 238 Q8BGT7 238 100% 0 0
NP_766017.1 238 Q8BGT7 238 100% 0 0

Chromosomal Locations for CCDS 29902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53380464 53380601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53381241 53381394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53383557 53383718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53384454 53384596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53389303 53389422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGTCAGAGGATCTAGCAAAACAGTTGGCTAGCTACAAAGCTCAACTCCAGCAAGTAGAAGCTGCCCTTT
CTGGAAATGGAGAAAATGAAGATCTATTGAAACTGAAGAAGGATTTGCAAGAAGTAATAGAACTGACCAA
AGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACT
CATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACAGTGTTACGAAGCGGAGA
TTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGAC
GCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATG
TCAAAAAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAA
TAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTC
CAAGAACAAGAAAGGCCAGGTAAAGAGGAGTATTTTTGCTTCTCCAGAAAGTGTAACGGGCAAAGTTGGA
GTAGGAACTTGTGGAATTGCTGACAAGCCCATGACACAGTATCAAGATACATCCAAGTACAATGTCAGGC
ATTTGATGCCTCAGTAA

Translation (238 aa):
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFASTQPT
HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKPM
SKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVTGKVG
VGTCGIADKPMTQYQDTSKYNVRHLMPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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