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Report for CCDS23410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23410.1 Public Mus musculus 9 Pcolce2 23 108 98 CCDS HistoryNCBI Gene:76477Re-query CCDS DB by CCDS ID:23410.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015498.8 ENSMUSP00000015498.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015498.8Link to Ensembl Protein Viewer:ENSMUSP00000015498.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015498Re-query CCDS DB by Protein ID:ENSMUSP00000015498
Original member Current member NCBI NM_029620.2 NP_083896.1 Accepted alive Link to Nucleotide Sequence:NM_029620.2Link to Protein Sequence:NP_083896.1Re-query CCDS DB by Nucleotide ID:NM_029620Re-query CCDS DB by Protein ID:NP_083896Link to BLAST:NP_083896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083896.1 414 Q8R4W6 414 100% 0 0

Chromosomal Locations for CCDS 23410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95637794 95637873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95638652 95638760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95670005 95670260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95678345 95678469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95681533 95681669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95686686 95686840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95692861 95692944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95694624 95694791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95694966 95695096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGGGGGCGCGAGCGCCTGCATCCCGCTCTGCCTGCTTCTGGCCACCGCGCGGATGGCCCGGCCGCAGA
CGCCAGAGAGACCTGTTTTCACATGTGGCGGCATTCTTACCGGAGAGTCTGGATTTATTGGCAGTGAAGG
TTTTCCTGGAATGTACCCTCCGAATAGCAAATGTACTTGGAAAATCACAGTTCCTGAGGGCAAAGTGGTC
GTCTTGAATTTTCGATTCATAGACCTGGAGAATGACAACCTGTGTCGCTATGACTTCGTGGATGTGTACA
ATGGCCACGCCAATGGCCAGCGTATCGGGCGCTTCTGTGGCACATTCCGACCTGGATCGCTCGTAGCCAG
CGGCAACAAGATGACGGTACAAATGATTTCTGACGCCAACACCGCGGGAAGTGGCTTCATGGCAACGTAC
TCTGCCGCTGCGCCAGATGGAAAAGGAGACCGGTATTGTGGAGGACGCCTTGAAAAACCTTCCGGTACCT
TTAAAACTCCCAACTGGCCAGACCGAGATTACCCCGTGGGAGTTACTTGTGTGTGGCACATCATAGCTCC
GAAGAACCAGCTTATAGAGTTAAAGTTTGAGAAGTTCGATGTTGAGCGCGATAACTACTGCAGATACGAC
TACGTGGCTGTGTTTAACGGTGGGGAAGTCAATGACGCCAAAAGAATTGGGAAGTACTGTGGGGACAGTC
CACCTGTGCCGATCGTGTCTGAGAGAAATGAACTTCTTATTCAGTTCTTATCAGACTTAAGTTTAACAGC
GGATGGTTTTATTGGTCACTACAAATTCAGGCCGAAAAAGTTTCCCACAACCACCACCACGCCCGTCACC
ACCACACTCCCCGTAACTACAGGTCTAAAGCCCACTGTGGCCCTGTGTCAGCAGAAGTGTAGACGGATGG
GGACTCTGGAGAGCAATTACTGTTCAAGCAACTTCGTGTTAGCCGGCACAGTTATCACGACCGTCACTCG
AGGTGGGAGCTTGCACGCCACAGTCTCGATCATCAGCATCTACAGGGAAGGCAACCTGGCCATTCAGCAG
GCTGGCAAGAACATGAGTGTCAAGCTCACTGTGGTGTGCAGGCAGTGCCCCCTTCTCAGACGAGGTCTCA
ATTACATTATTATGGGACAAGTGGGTGAAGATGGGCGTGGCAAAATCATGCCAAACAGCTTTGTCAAAAT
GTTCAAGAATAAGAATCAGAAGCCCATGAACGCACTGAAGAACAAGCAGTGTTAG

Translation (414 aa):
MGGASACIPLCLLLATARMARPQTPERPVFTCGGILTGESGFIGSEGFPGMYPPNSKCTWKITVPEGKVV
VLNFRFIDLENDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGSLVASGNKMTVQMISDANTAGSGFMATY
SAAAPDGKGDRYCGGRLEKPSGTFKTPNWPDRDYPVGVTCVWHIIAPKNQLIELKFEKFDVERDNYCRYD
YVAVFNGGEVNDAKRIGKYCGDSPPVPIVSERNELLIQFLSDLSLTADGFIGHYKFRPKKFPTTTTTPVT
TTLPVTTGLKPTVALCQQKCRRMGTLESNYCSSNFVLAGTVITTVTRGGSLHATVSIISIYREGNLAIQQ
AGKNMSVKLTVVCRQCPLLRRGLNYIIMGQVGEDGRGKIMPNSFVKMFKNKNQKPMNALKNKQC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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