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Report for CCDS40856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40856.1 Public Mus musculus X H2al1m 23 108 98 CCDS HistoryNCBI Gene:76383Re-query CCDS DB by CCDS ID:40856.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073949.3 ENSMUSP00000073605.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073949.3Link to Ensembl Protein Viewer:ENSMUSP00000073605.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000073949Re-query CCDS DB by Protein ID:ENSMUSP00000073605
Original member Current member NCBI NM_029588.3 NP_083864.1 Accepted alive Link to Nucleotide Sequence:NM_029588.3Link to Protein Sequence:NP_083864.1Re-query CCDS DB by Nucleotide ID:NM_029588Re-query CCDS DB by Protein ID:NP_083864Link to BLAST:NP_083864.1

Chromosomal Locations for CCDS 40856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9283859 9284176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGCCAAGAAAATGCAAAGGCGAAGAAGACAGAAAAGAACCCGCTCCCAGAGAGGTGAGCTTCCTCTTA
GCCTTGTAGATCGTTTCCTACGAGAGGAATTCCATTCCAGTCGCCTGAGCTCTTCCGCACTTTCATTCCT
CACGAGTGTGCTCGAGTACTTAACATCGAACATCCTCGAACTGGCTGGTGAGGTGGCCCACACCACTGGC
AGGAAGCGCGTAACTCCAGAGGATGTACGTCTGGTGGTACAGAACAACGAACAGCTCCGCCAACTCTTCA
AACCAGGTGGCACATCAGTGAATGAGGATGACAACTGA

Translation (105 aa):
MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTG
RKRVTPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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