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Report for CCDS33081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33081.1 Public Homo sapiens 19 GARIN5A 24 110 108 CCDS HistoryNCBI Gene:112703Re-query CCDS DB by CCDS ID:33081.1Re-query CCDS DB by GeneID:112703See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595790.5 ENSP00000471272.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595790.5Link to Ensembl Protein Viewer:ENSP00000471272.2Re-query CCDS DB by Nucleotide ID:ENST00000595790Re-query CCDS DB by Protein ID:ENSP00000471272
Original member Current member NCBI NM_138411.3 NP_612420.1 Accepted alive Link to Nucleotide Sequence:NM_138411.3Link to Protein Sequence:NP_612420.1Re-query CCDS DB by Nucleotide ID:NM_138411Re-query CCDS DB by Protein ID:NP_612420Link to BLAST:NP_612420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612420.1 231 Q6IPT2-2 231 100% 0 0

Chromosomal Locations for CCDS 33081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50467625 50467829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50475325 50475455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50475833 50475933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50476130 50476388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGGGCCGCCCCTTTGGCCTGATCTCCAGGAGCCGCCCCCTCCAGGGACGTCATCACAAATCAGGAGCC
CGCTCTTGTGTGACGTCATAAAGCCCGCTCCGCATCATGACGTCACAGTGCGCGTAGTCCCGCCCCCTCG
CTTTCTCCCTCTGCTCCTCCGTCCGCTCCCGTCGGACGGGGACATTGCAATGAGGCGGGATCGCGGCCCT
AAGCCGGCCCTGGGTGGAGCTGGCGAGGTGGAACCAGGTGGGATGGCAGCCTCTCCCACGGGCCGTCCCA
GACGGCTCCAACGCTACCTCCAGAGCGGCGAATTCGACCAGTTTCGGGACTTCCCCATCTTTGAGAGCAA
CTTCGTACAGGTGACTCGGTTGGGAGAAGTTGCCAACGAGGTCACCATGGGGGTGGCAGCCTCCAGTCCA
GCCCTGGAGCTCCCGGACCTATTGCTTCTGGCCGGCCCTGCCAAGGAGAACGGACACCTGCAACTCTTCG
GGCTGTTCCCCTTGAAGTTCGTCCAGCTCTTTGTCCACGACAAAAGCCGGTGTCAGCTCGAGGTCAAGTT
GAACACCAGCCGCACCTTCTACTTGCAGCTGCGGGCCCCACTCAAGACCCGAGACCGAGAGTTCGGCCAG
TGGGTGCGGCTGCTCTACCGCCTGCGCTTCCTCTCTGCTTCTGCTGTGCCCTTCACGCAGGAGTAA

Translation (231 aa):
MGPPLWPDLQEPPPPGTSSQIRSPLLCDVIKPAPHHDVTVRVVPPPRFLPLLLRPLPSDGDIAMRRDRGP
KPALGGAGEVEPGGMAASPTGRPRRLQRYLQSGEFDQFRDFPIFESNFVQVTRLGEVANEVTMGVAASSP
ALELPDLLLLAGPAKENGHLQLFGLFPLKFVQLFVHDKSRCQLEVKLNTSRTFYLQLRAPLKTRDREFGQ
WVRLLYRLRFLSASAVPFTQE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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