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Report for CCDS57728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57728.1 Public Mus musculus X 4930402K13Rik 23 108 98 CCDS HistoryNCBI Gene:75775Re-query CCDS DB by CCDS ID:57728.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059967.1 ENSMUSP00000053000.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059967.1Link to Ensembl Protein Viewer:ENSMUSP00000053000.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000059967Re-query CCDS DB by Protein ID:ENSMUSP00000053000
Original member Current member NCBI NM_001270700.1 NP_001257629.1 Accepted alive Link to Nucleotide Sequence:NM_001270700.1Link to Protein Sequence:NP_001257629.1Re-query CCDS DB by Nucleotide ID:NM_001270700Re-query CCDS DB by Protein ID:NP_001257629Link to BLAST:NP_001257629.1

Chromosomal Locations for CCDS 57728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9104674 9105921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGGAGACCACAAGCTTCCAGGGAGCCAGGCCCGTCGGTCACTTAAGACAGCATCTCAGGGCACTACTG
CCAAGTCTATATGGAAAGACTCTTCCAAGTGTTTTTCAAAGCACAAGAGAGAGCAGCTGAAGTTGCCCAC
CTCCGTGGAGAAGCAACACCGACACTATGGTAAGGAACGATCAGGGTCAGATGACTTCAGAAAAGCCATG
GCATTGACTGAAGAGATGACCCCACACAGTGTGGAGAGTCCCCTTTTCCCAACAATTTCTCACAGAGTAT
GTAGTCCCACCGCCAACAAGAATCAGCAGAAGCCAGCTGATGATTCAGGACTGTTATACCCGCTTTTGAC
AGTCCGGCCACCACCACGTAGAACCATATGGGGCAACATAGGTACCCGACACAATCAACAGCTGCTTGCT
CCATGGCCTAGAGGAGAAGATAATTCTGCAGACATACTAATCAAAATGCTGGAAACACCAAGATCTAACC
GGATGCTGGAAAATAAGTGGCCATATTGGGAAGATCACAGGGAAGCAACCAAGCAGCCCACCACCTCTGC
CAAACAGTCTCAAGGAAAATCTGGTCTGGAACATCATAAGCTTCCCTGGTTATGTGAAGGCACTTGGCTC
CATGACAGCAAACACAGAGGACAGGATATGCTTAGCTCTATTTATTATAAATATATATACAAAGGAGGGA
ATGACGAATGGGCTGAAACATATAGAGATTCCATGCAGCATATTGACACAGGATATGAAAACCAATCAAG
CTATGAAGAGTCACCTGTGAGGAGAACTAATATGTGTAATTTTGACATCAAGTATGGTAAGAAAATGAGC
AAAGGGAAGGACATGCCATTATCTAAACAGGAATCCAGCTTTGTTATAAAACTCCAAACCCCACCAGATT
TTTACAGAGCCAACAAATACAGGAAGTATGAGTCACCAGTTCACCTAGGAACGGAAGAAACTGATCCCAA
TGAACTTGAACTTCAAGGTGCAAATGCCCGTAAACCAGAGCAGGCCTATGAACCAACTGACTGGAAGTAC
TTTATAAGCAAGGATGACACTACACCGAGCTCCCTTGAGCAGATGTTTATGAAGAAGGGATGGGGTTATG
AATGTTCTTCTCCATCATCAAAAATGTTTAGAGATTATTATTGGATCGTGGATTCAGATGATGATGACAC
CGACAATGAAGAAGAAGAGGAGGAGAAATTGAAGGAACAGCAGACAGAAAATAAGTAG

Translation (415 aa):
MGDHKLPGSQARRSLKTASQGTTAKSIWKDSSKCFSKHKREQLKLPTSVEKQHRHYGKERSGSDDFRKAM
ALTEEMTPHSVESPLFPTISHRVCSPTANKNQQKPADDSGLLYPLLTVRPPPRRTIWGNIGTRHNQQLLA
PWPRGEDNSADILIKMLETPRSNRMLENKWPYWEDHREATKQPTTSAKQSQGKSGLEHHKLPWLCEGTWL
HDSKHRGQDMLSSIYYKYIYKGGNDEWAETYRDSMQHIDTGYENQSSYEESPVRRTNMCNFDIKYGKKMS
KGKDMPLSKQESSFVIKLQTPPDFYRANKYRKYESPVHLGTEETDPNELELQGANARKPEQAYEPTDWKY
FISKDDTTPSSLEQMFMKKGWGYECSSPSSKMFRDYYWIVDSDDDDTDNEEEEEEKLKEQQTENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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