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Report for CCDS19678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19678.1 Public Mus musculus 5 Rilpl1 23 108 98 CCDS HistoryNCBI Gene:75695Re-query CCDS DB by CCDS ID:19678.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062153.11 ENSMUSP00000050014.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062153.11Link to Ensembl Protein Viewer:ENSMUSP00000050014.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062153Re-query CCDS DB by Protein ID:ENSMUSP00000050014
Original member NCBI NM_021430.2 NP_067405.1 Updated not alive Link to Nucleotide Sequence:NM_021430.2Link to Protein Sequence:NP_067405.1Re-query CCDS DB by Nucleotide ID:NM_021430Re-query CCDS DB by Protein ID:NP_067405
Current member NCBI NM_021430.3 NP_067405.1 Accepted alive Link to Nucleotide Sequence:NM_021430.3Link to Protein Sequence:NP_067405.1Re-query CCDS DB by Nucleotide ID:NM_021430Re-query CCDS DB by Protein ID:NP_067405Link to BLAST:NP_067405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067405.1 406 Q9JJC6 406 100% 0 0

Chromosomal Locations for CCDS 19678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124493700 124493844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124501840 124501932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124503555 124503733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124514519 124514743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124515518 124515636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124521251 124521401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124530675 124530983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGAGGAGCCGCTAGGGTCACCGCCCGCCGCCCTGTCGGCTCTGGAGAAGAACGTGGCGGAGCTGACCG
TCATGGATGTGTACGATATCGCGTCGCTCGTGGGCCACGAGTTCGAGAGGGTCATCGACCAACACGGCTG
CGAGTCCATCGCACGCCTCATGCCCAAGGTCGTGAGGGTCCTGGAGATCCTCGAGGTGCTGGTTAGCCGG
CACCACGTCGCTCCCGAGCTAGACGAGCTGCGCCTGGAACTGGACCGGTTGCGCGTAGAGAGGATGGACC
GCATTGAAAAGGAGCGCAAGCATCAAAAGGAGCTGGAGCTGGTGGAGGACGTGTGGCGGGGTGAAGCACA
GGACCTCCTGTCCCAGATTGCCCAGCTGCAGGAGGAGAATAAGCAGCTGATGACCAACCTCAACCACAAG
GACGTGGGCTTCTCCGAGGAGGAGTTCCAGAAGCAGGAAGGCATGTCAGAGCGTGAGCGGCAGGTGATGA
AGAGGCTGAAGGAGGTGGTGGACAAGCAGAGGGATGAGCTCCGAGCCAAAGACAGGGAGCTGGGCCTGAA
GAATGAGGACGTCGAGGCTTTGCAGCAGCAGCAGACGAGGCTAATGAAGATCAACCATGACCTTCGGCAC
CGGGTCACCGTGGTTGAGGCCCAGGGGAAAGCCCTGATTGAGCAGAAGGTGGAGCTCGAAGCAGACCTGC
AGACCAAGGAGCAGGAGATGGGCAGCCTGCGGGCTGAACTCGGAAAGCTTCGCGAGAGGCTGCAGGGCGA
GCACAGCCAGAATGGGGAGGAGGAGGAGGCTGAGATCCAGCCGCAGCCAGATGGAGAGGAATCGATTTCA
GATGCAGAGAAGGCCGCCCTGGACCTCAAGGACCCCAACCGCCCGAGGTTCACGCTCCAGGAGCTGCGGG
ACGTCCTGCACGAGAGGAACGAGCTCAAGTCCAAGGTGTTTCTGCTGCAAGAGGAACTGGCCTACTATAA
GAGTGAAGAAATAGAAGAAGAGAATCGAATACCCCAGCCTCCGCCCATTACACACCCGAGGACGTCCCCC
CAGCCTGAATCGGGGATCAAGCGACTGTTTAGCTTTTTCTCCCGGGACAAGAAGCGCCTGGCCAACACGC
AGAGACCCACACACATCCACGAGTCCTTTGGCCAGTGGGCAATTACCCAGCGAGATGACGGGTACACAGA
GCAAGGACAGGAAGCCCTGCAGCACCTGTGA

Translation (406 aa):
MEEPLGSPPAALSALEKNVAELTVMDVYDIASLVGHEFERVIDQHGCESIARLMPKVVRVLEILEVLVSR
HHVAPELDELRLELDRLRVERMDRIEKERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLNHK
DVGFSEEEFQKQEGMSERERQVMKRLKEVVDKQRDELRAKDRELGLKNEDVEALQQQQTRLMKINHDLRH
RVTVVEAQGKALIEQKVELEADLQTKEQEMGSLRAELGKLRERLQGEHSQNGEEEEAEIQPQPDGEESIS
DAEKAALDLKDPNRPRFTLQELRDVLHERNELKSKVFLLQEELAYYKSEEIEEENRIPQPPPITHPRTSP
QPESGIKRLFSFFSRDKKRLANTQRPTHIHESFGQWAITQRDDGYTEQGQEALQHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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