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Report for CCDS52574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52574.1 Public Mus musculus 8 Kxd1 23 108 98 CCDS HistoryNCBI Gene:75620Re-query CCDS DB by CCDS ID:52574.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093456.11 ENSMUSP00000091165.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093456.11Link to Ensembl Protein Viewer:ENSMUSP00000091165.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093456Re-query CCDS DB by Protein ID:ENSMUSP00000091165
Original member Current member NCBI NM_029366.2 NP_083642.1 Accepted alive Link to Nucleotide Sequence:NM_029366.2Link to Protein Sequence:NP_083642.1Re-query CCDS DB by Nucleotide ID:NM_029366Re-query CCDS DB by Protein ID:NP_083642Link to BLAST:NP_083642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083642.1 177 Q80XH1 177 100% 0 0

Chromosomal Locations for CCDS 52574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70513936 70514168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70515395 70515441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70518365 70518517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70519937 70520037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTGATGATG
TCAATGCCATAATCCTGGCCCAGAAGAATATGCTGGACCGCTTCGAGAAAACCAACGAGATGCTTCTGAA
CTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGAGTGAGCGCTTCATGCACCATACCCGCACCTTG
GTGGACATGAAACGGGATCTGGACAGCATTTTCCGAAGGATCAGGACACTGAAGGGGAAGCTAGCCCGGC
AGCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTCATTCCTAGAGGATGAAGATGAAGACCCTATCCC
ACCCAGTATCACCACAACCATCGCCACCTCGGAGCAGAGCACGGGCTCCTGTGACACCAGCCCTGACACG
GTCTCGCCATCCCTAAGTCCTGGCTTTGAGGACCTATCACACATTCAACCTGGCTCTCCTGCCATCAACG
GCCACAGACAGACAGATGATGAGGAAGAGACACATGAAGAATAG

Translation (177 aa):
MDTPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFMHHTRTL
VDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGSFLEDEDEDPIPPSITTTIATSEQSTGSCDTSPDT
VSPSLSPGFEDLSHIQPGSPAINGHRQTDDEEETHEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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