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Report for CCDS17886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17886.1 Public Mus musculus 3 Clca3a1 23 108 98 CCDS HistoryNCBI Gene:12722Re-query CCDS DB by CCDS ID:17886.1Re-query CCDS DB by GeneID:12722See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059091.5 ENSMUSP00000054526.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059091.5Link to Ensembl Protein Viewer:ENSMUSP00000054526.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059091Re-query CCDS DB by Protein ID:ENSMUSP00000054526
Original member Current member NCBI NM_009899.4 NP_034029.2 Accepted alive Link to Nucleotide Sequence:NM_009899.4Link to Protein Sequence:NP_034029.2Re-query CCDS DB by Nucleotide ID:NM_009899Re-query CCDS DB by Protein ID:NP_034029Link to BLAST:NP_034029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034029.2 902 Q9QX15 902 100% 0 0

Chromosomal Locations for CCDS 17886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144730612 144730955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144736917 144737156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144737863 144738030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144746764 144747028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144747370 144747594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144748401 144748501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144749665 144749842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144751934 144752158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144754729 144754956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144755154 144755331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144757958 144758066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144758407 144758554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144759171 144759311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144760564 144760722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2709 nt):
ATGGTGCCAGGGCTGCAGGTCCTTCTGTTCCTCACCCTGCATCTCCTGCAGAACACAGAGAGCTCCATGG
TGCATCTCAACAGCAATGGATACGAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCGGAGGACGAAAG
GCTCATCCCAAGCATAAAGGAAATGGTAACTCAAGCCTCTACCTACCTGTTTGAAGCCAGCCAAGGAAGA
GTTTATTTCAGAAACATAAGCATATTAGTCCCGATGACCTGGAAGTCAAAACCTGAGTACTTAATGCCAA
AACGAGAATCGTATGACAAAGCAGACGTCATAGTTGCGGATCCTCACCTGCAACATGGAGACGACCCCTA
CACCCTTCAGTATGGACAGTGTGGGGACAGAGGACAGTACATACACTTCACTCCAAACTTCCTACTCACT
GATAACTTGCGTATCTACGGACCCCGAGGCAGAGTCTTTGTCCATGAGTGGGCCCATCTCCGGTGGGGAG
TATTTGATGAGTATAACGTGGACCAGCCTTTCTACATGTCTAGAAAGAACACTATAGAAGCAACAAGGTG
TTCCACCAGGATCACTGGCACCAATGTGGTTCACAACTGTGAGAGAGGCAACTGTGTCACAAGGGCGTGC
CGGCGTGACTCGAAGACACGGCTGTATGAACCCAAATGTACATTTATCCCAGACAAAATACAGACGGCTG
GGGCCTCCATAATGTTCATGCAAAACCTTAATTCTGTGGTTGAATTTTGCACAGAAAAAAACCACAATGC
AGAAGCCCCAAACCTACAAAACAAAATGTGCAATCGCAGAAGCACGTGGGATGTAATCAAGACGTCTGCT
GACTTTCAGAATGCCCCTCCCATGAGAGGAACAGAAGCCCCTCCTCCACCTACATTTTCACTGCTCAAGT
CCAGAAGGCGAGTGGTGTGCTTGGTGCTGGATAAATCTGGAAGCATGGACAAAGAAGACCGTCTTATTCG
AATGAATCAAGCAGCAGAACTGTACTTAACTCAAATTGTGGAAAAGGAGTCTATGGTTGGATTAGTCACA
TTTGACAGCGCTGCCCACATCCAAAATTATCTAATAAAAATAACGAGTAGTAGTGACTACCAAAAGATCA
CCGCAAACCTCCCCCAACAGGCTTCTGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGC
AATTACCTCCAGTGACCAGAGCACTTCCGGTTCTGAGATCGTATTGCTGACAGATGGGGAAGATAATGGA
ATACGTTCCTGCTTTGAGGCCGTCTCTCGCAGCGGTGCCATCATCCACACCATCGCTCTGGGGCCTTCGG
CTGCCCGAGAACTGGAGACTCTGTCGGACATGACAGGAGGGCTTCGTTTCTATGCCAACAAAGACCTAAA
CAGCCTTATCGATGCTTTCAGTAGAATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTG
GAGAGCAAAGCCTTCGATGTCAGAGCAGGGGCATGGATAAACGGTACAGTACCTCTGGACAGTACCGTCG
GCAACGACACGTTCTTTGTTATCACCTGGATGGTAAAAAAGCCAGAAATCATTCTTCAAGATCCAAAAGG
AAAAAAATATACAACCTCAGATTTCCAAGATGATAAACTAAACATCCGGTCTGCTAGACTTCAAATACCG
GGCACTGCAGAGACAGGTACTTGGACTTACAGCATCACGGGTACCAAGTCTCAGTTGATTACAATGACAG
TGACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACTGCTCACATGAGTCAGAGCACAGC
CCAGTACCCTAGCCGGATGATTGTGTACGCACGGGTCAGCCAAGGATTTTTGCCTGTTCTGGGAGCCAAT
GTCACAGCCCTCATAGAAGCTGAACATGGACATCAAGTCACCTTGGAGCTCTGGGACAATGGGGCAGGTG
CTGATACTGTTAAAAATGATGGCATCTACACAAGATACTTTACAGATTATCATGGAAATGGTAGATACAG
CCTAAAAGTGCGTGTCCAGGCACAAAGAAACAAAACCAGACTGAGCTTAAGACAGAAGAACAAGTCTTTA
TATATACCTGGCTATGTGGAAAATGGTAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAG
CCATAGAAGCTACAGTGGAAGACTTCAACAGAGTAACCTCTGGAGGGTCGTTTACTGTGTCTGGAGCGCC
CCCTGATGGCGACCACGCTCGTGTGTTCCCACCAAGTAAAGTCACAGACCTGGAGGCTGAGTTTATAGGT
GATTATATTCACCTTACATGGACGGCCCCTGGCAAGGTTCTCGACAATGGAAGAGCACATAGATACATCA
TCAGAATGAGCCAGCATCCTCTGGATCTCCAAGAAGATTTTAACAATGCTACTTTAGTGAATGCTTCCAG
TCTGATACCTAAAGAAGCTGGCTCAAAAGAAACATTTAAATTCAAACCAGAAACTTTTAAAATAGCAAAT
GGCATCCAGCTCTACATTGCAATCCAGGCAGACAATGAAGCCAGTCTCACCTCTGAGGTCTCCAACATCG
CACAGGCTGTCAAGCTTACTTCTCTAGAAGATAGTATCTCTGCACTGGGTGATGATATTTCTGCAATCTC
TATGACAATTTGGGGGTTAACTGTGATTTTTAACTCTATTTTAAACTAG

Translation (902 aa):
MVPGLQVLLFLTLHLLQNTESSMVHLNSNGYEGVVIAINPSVPEDERLIPSIKEMVTQASTYLFEASQGR
VYFRNISILVPMTWKSKPEYLMPKRESYDKADVIVADPHLQHGDDPYTLQYGQCGDRGQYIHFTPNFLLT
DNLRIYGPRGRVFVHEWAHLRWGVFDEYNVDQPFYMSRKNTIEATRCSTRITGTNVVHNCERGNCVTRAC
RRDSKTRLYEPKCTFIPDKIQTAGASIMFMQNLNSVVEFCTEKNHNAEAPNLQNKMCNRRSTWDVIKTSA
DFQNAPPMRGTEAPPPPTFSLLKSRRRVVCLVLDKSGSMDKEDRLIRMNQAAELYLTQIVEKESMVGLVT
FDSAAHIQNYLIKITSSSDYQKITANLPQQASGGTSICHGLQAGFQAITSSDQSTSGSEIVLLTDGEDNG
IRSCFEAVSRSGAIIHTIALGPSAARELETLSDMTGGLRFYANKDLNSLIDAFSRISSTSGSVSQQALQL
ESKAFDVRAGAWINGTVPLDSTVGNDTFFVITWMVKKPEIILQDPKGKKYTTSDFQDDKLNIRSARLQIP
GTAETGTWTYSITGTKSQLITMTVTTRARSPTMEPLLATAHMSQSTAQYPSRMIVYARVSQGFLPVLGAN
VTALIEAEHGHQVTLELWDNGAGADTVKNDGIYTRYFTDYHGNGRYSLKVRVQAQRNKTRLSLRQKNKSL
YIPGYVENGKIVLNPPRPDVQEEAIEATVEDFNRVTSGGSFTVSGAPPDGDHARVFPPSKVTDLEAEFIG
DYIHLTWTAPGKVLDNGRAHRYIIRMSQHPLDLQEDFNNATLVNASSLIPKEAGSKETFKFKPETFKIAN
GIQLYIAIQADNEASLTSEVSNIAQAVKLTSLEDSISALGDDISAISMTIWGLTVIFNSILN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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