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Report for CCDS22100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22100.1 Public Mus musculus 8 Tex29 23 108 98 CCDS HistoryNCBI Gene:75528Re-query CCDS DB by CCDS ID:22100.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033909.13 ENSMUSP00000033909.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033909.13Link to Ensembl Protein Viewer:ENSMUSP00000033909.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033909Re-query CCDS DB by Protein ID:ENSMUSP00000033909
Original member Current member EBI ENSMUST00000166638.1 ENSMUSP00000132090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166638.1Link to Ensembl Protein Viewer:ENSMUSP00000132090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166638Re-query CCDS DB by Protein ID:ENSMUSP00000132090
Original member Current member NCBI NM_029326.1 NP_083602.1 Accepted alive Link to Nucleotide Sequence:NM_029326.1Link to Protein Sequence:NP_083602.1Re-query CCDS DB by Nucleotide ID:NM_029326Re-query CCDS DB by Protein ID:NP_083602Link to BLAST:NP_083602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083602.1 186 Q9DA77 186 100% 0 0

Chromosomal Locations for CCDS 22100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11840919 11840976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11844152 11844262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11853125 11853194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11854155 11854339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11854976 11855038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11855632 11855705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGAAAGACACCAAAGAAATCAAGAGGTCCCCACCACATCTCCTGAAGAAGTTTGCAGTGTGTGACATCC
CTCTGTATGACATCTGTGACTACAATGTCACCAGGGAGCGCTGCAGGAGTCTCGACTGCTGTTTCTACAG
GGGCGTCTGCTACGAGAAAGCTGTTCCCATTTATGTACAGGTGTTCTTCACTCTGATTTGGTTCGTGGCA
GGGGCCTTCATCATTGCCGTCATTTATAGGGTTATACAGGGGACTAAAAAAGAGAAGAAGCCTTTACTCC
CAGAGGACTCACAGGTTGAAATACTGAAGTCTCCCACTCCAGAACTCATTCCAGAACCCATTCCAGAACC
TATTCCAGAACCCATTCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCCCAATA
GAAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAGCCC
CAGAACCGCCCTCAAACCCAGAGGTAAAGAAGGTCAACAGTGGCAGTGCCGTGCCCCAGGCAGCACCTTG
A

Translation (186 aa):
MKDTKEIKRSPPHLLKKFAVCDIPLYDICDYNVTRERCRSLDCCFYRGVCYEKAVPIYVQVFFTLIWFVA
GAFIIAVIYRVIQGTKKEKKPLLPEDSQVEILKSPTPELIPEPIPEPIPEPIPEPIREPPPPVKKTESPI
EAGCCLWMKSKPAKDQPQKETAAPEPPSNPEVKKVNSGSAVPQAAP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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