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Report for CCDS56895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56895.1 Public Mus musculus 13 Pou5f2 23 108 98 CCDS HistoryNCBI Gene:75507Re-query CCDS DB by CCDS ID:56895.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000175955.3 ENSMUSP00000135597.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175955.3Link to Ensembl Protein Viewer:ENSMUSP00000135597.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175955Re-query CCDS DB by Protein ID:ENSMUSP00000135597
Original member Current member NCBI NM_029315.1 NP_083591.1 Accepted alive Link to Nucleotide Sequence:NM_029315.1Link to Protein Sequence:NP_083591.1Re-query CCDS DB by Nucleotide ID:NM_029315Re-query CCDS DB by Protein ID:NP_083591Link to BLAST:NP_083591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083591.1 329 Q9DAC9 329 99.696% 0 1

Chromosomal Locations for CCDS 56895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 78024941 78025930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCCGGGCGGAGGTCTTCAAACGTCTTCCCTCTCTCAGGCAATAGTGGTGGTGGCCTGGAAGTTGACA
CCCCAACATGGTTGAGCAGCCAGGCAGCCACAAGCAGATTAATGGTGCGACCAAGTATGGGTCCAGGCAT
CTGTCCAGGCCCTGAGGTATGGGGAGTGCCTCTGGGCTCCTCACCTTATGAATTCCGAGGTGGGATAGCA
CCCTACAGAGCTTGTGAGGCAAGGGCCTGGTCCCAGAGTTCCTCTGAGGATACCTGCCCAGGACCTTACA
TCGCCTTGAGATACATGCCAAATTTGGCACTGCCAGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCA
GCTAGCCAAGGAACTGAGACAAAAGAGGATGACCCTGGGGTACTCACAGGCCGATGTGGGATTCGCTGTG
GGAGCTATGTTTGGGAAGGTTCTCAGCCAGACGACCATATGCCGCTTCGAGGCCCAGCAGCTCAGCCTTG
CCAACATGTGGAAGCTGCGACCCCTGCTGAAAATGTGGTTAGAGGAAGTAGATGAGAAGAACCTTCTGGG
CATATGCAGAATGGAGATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATT
GGGAGCAATCTGGAAAAACTGTTCTTGCAATGTCCAGAGCCTACGCCCCAGCAAATCAGCTATATTGCTG
GGCGCCTCCGGCTGCAGAAAGACCTGGTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCC
AACCAATGATACCTCCCGGAGGGAGGATGTGGGGGCAACTGGGTCTCCTTTCCCAGGTCCACCAGTGTGC
TTTCCCATGGCACCAGGGCTCCATTTTGATTTCCCCCACTATGAGGGATCATGCCTTACACCCCTGTACT
CCTCTACCCCATTTCCTGTACGAGGAGCCCTTTTGTCTGCCCCAACCACCACTCTGGGCCTCCCCAGGCT
GTCAAGCTGA

Translation (329 aa):
MAGRRSSNVFPLSGNSGGGLEVDTPTWLSSQAATSRLMVRPSMGPGICPGPEVWGVPLGSSPYEFRGGIA
PYRACEARAWSQSSSEDTCPGPYIALRYMPNLALPEDVSAIQKEMEQLAKELRQKRMTLGYSQADVGFAV
GAMFGKVLSQTTICRFEAQQLSLANMWKLRPLLKMWLEEVDEKNLLGICRMEMILEQARKRRRASRERRI
GSNLEKLFLQCPEPTPQQISYIAGRLRLQKDLVQVWFSNRSQMGSWPTNDTSRREDVGATGSPFPGPPVC
FPMAPGLHFDFPHYEGSCLTPLYSSTPFPVRGALLSAPTTTLGLPRLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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