NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26545.1 Public Mus musculus 13 Pfn3 23 108 98 CCDS HistoryNCBI Gene:75477Re-query CCDS DB by CCDS ID:26545.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054146.4 ENSMUSP00000054053.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054146.4Link to Ensembl Protein Viewer:ENSMUSP00000054053.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054146Re-query CCDS DB by Protein ID:ENSMUSP00000054053
Original member Current member NCBI NM_029303.2 NP_083579.1 Accepted alive Link to Nucleotide Sequence:NM_029303.2Link to Protein Sequence:NP_083579.1Re-query CCDS DB by Nucleotide ID:NM_029303Re-query CCDS DB by Protein ID:NP_083579Link to BLAST:NP_083579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083579.1 137 Q9DAD6 137 100% 0 0

Chromosomal Locations for CCDS 26545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55414753 55415166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGAGTGACTGGAAGGGCTACATCAGTGCAGTGCTGCGGGATCAGCGGATCGATGACGTGGCTATCGTGG
GCCACTCGGACAATCGCTGTGTGTGGGCATCACGGCCTGGGGGTCTGCTGGCTGCCATCTCCCCGCAGGA
GGTGGGTGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCGCCGC
TGCTGCGTTATCCGTGACTACCTGCTGGCCGAGGGTGACGGCGTACTGGATGCGCGCACCAAGGGGCTAG
ACGGGCGTGCAATCTGTGTGGGCCACACGCCACGGGCGCTCCTGGTGCTCATGGGCAGACGAGGCGTGCA
TGGAGGCATCCTCAATAAGACAGTGCACGATCTGATTGGTGGGCTGCGTGAGCAGTGCTCTTAG

Translation (137 aa):
MSDWKGYISAVLRDQRIDDVAIVGHSDNRCVWASRPGGLLAAISPQEVGVLTGPDRHTFLQTGLSVAGRR
CCVIRDYLLAEGDGVLDARTKGLDGRAICVGHTPRALLVLMGRRGVHGGILNKTVHDLIGGLREQCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH