NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16558.1 Public Mus musculus 2 Tmco5b 23 108 98 CCDS HistoryNCBI Gene:75275Re-query CCDS DB by CCDS ID:16558.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040856.2 ENSMUSP00000042247.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040856.2Link to Ensembl Protein Viewer:ENSMUSP00000042247.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040856Re-query CCDS DB by Protein ID:ENSMUSP00000042247
Original member Current member NCBI NM_029232.2 NP_083508.1 Accepted alive Link to Nucleotide Sequence:NM_029232.2Link to Protein Sequence:NP_083508.1Re-query CCDS DB by Nucleotide ID:NM_029232Re-query CCDS DB by Protein ID:NP_083508Link to BLAST:NP_083508.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083508.1 307 Q80X59 307 100% 0 0

Chromosomal Locations for CCDS 16558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113286676 113286710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113287378 113287527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113287807 113287924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113288237 113288287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113289735 113289803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113290776 113290832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113291323 113291382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113291878 113291942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113295463 113295538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113295788 113295831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113296811 113297009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGAAGACGCTGGACAGAACCCGTTGGATGATGAAGCTGAGATTACAGAAATACCAACTTTAGAAGCCA
TAAAACAGAATCTCAAGTACCTGAACTCAGACCTTGAAAAGGATCTACAGAGGCTGGATGAGGCCAATCA
GATTCTCCTCAGAAAGATTCAAAAGAAAGAAGAATCTATACAAAGTCTTGAGAGAGATATTGCCCTGTCC
ATAGGAAGAGTCCCAGAGAGGGATGACTTCAATGAGATCCTAGCACAGAAGGAGACTGCCTTGAAGGACT
TGGAGCTGGAGTCAGCAAAGCTGGAGAAAAAGAATAAGACCCTAAGCAAGAATGTGATGGAACTTCAGAA
GAAGATTTCAAAAGGACTCAAGAACATTGCCTCTGATCCAGAAACCCTGAAAAAGAAAGTAACAGAATTC
AAGGTGAAACTACAAAAGTCAACCGAGTCCTGTGCACAACAAGAGAAGGAAATCGCCAAGATGGAAAGTG
ACTACCAATCTGTATTTCAGCTCTGTGAAGACCAGGCCCACTACATAAAGAAATACCAAGAAATTCTGAG
GGAGATGGAGAAGGAAAAAGAAGTGATGCTGCTTGAGAAAGAAATATCCAAAGCCCAGAATGACTCTTCC
CAAGTAGTGAAACCGGGATCAACTCTGGTAGAGACCATTCAAAGTAACATGGAGAAGAACATCATTAAGA
AACAGAAGAGGAAGTTTTGGCTTAGGCACTTCCGGTACCTTTTCTTCATGGTCATGATCGTCATCCGGTT
ACTGGGTTACGTGTTCTTCCACCTGCAATATGTAAACCCAGACTTTCTCGTGGACACCCTGCCCATGCTG
ATGAGCAGAAGTAGCTTGAAGTGGCTAAGGGACATATTGTTTCCCTTCCTTACCCTAGAAGTGGAAGACG
TGCTGCCACACTAG

Translation (307 aa):
MEDAGQNPLDDEAEITEIPTLEAIKQNLKYLNSDLEKDLQRLDEANQILLRKIQKKEESIQSLERDIALS
IGRVPERDDFNEILAQKETALKDLELESAKLEKKNKTLSKNVMELQKKISKGLKNIASDPETLKKKVTEF
KVKLQKSTESCAQQEKEIAKMESDYQSVFQLCEDQAHYIKKYQEILREMEKEKEVMLLEKEISKAQNDSS
QVVKPGSTLVETIQSNMEKNIIKKQKRKFWLRHFRYLFFMVMIVIRLLGYVFFHLQYVNPDFLVDTLPML
MSRSSLKWLRDILFPFLTLEVEDVLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH