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Report for CCDS30136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30136.1 Public Mus musculus X Ct55 23 108 98 CCDS HistoryNCBI Gene:75013Re-query CCDS DB by CCDS ID:30136.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069209.1 ENSMUSP00000064619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069209.1Link to Ensembl Protein Viewer:ENSMUSP00000064619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000069209Re-query CCDS DB by Protein ID:ENSMUSP00000064619
Original member Current member NCBI NM_029142.1 NP_083418.1 Accepted alive Link to Nucleotide Sequence:NM_029142.1Link to Protein Sequence:NP_083418.1Re-query CCDS DB by Nucleotide ID:NM_029142Re-query CCDS DB by Protein ID:NP_083418Link to BLAST:NP_083418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083418.1 236 Q14BQ3 236 100% 0 0

Chromosomal Locations for CCDS 30136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53724958 53725048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53727367 53727548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53733727 53733859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53736275 53736387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53737666 53737857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGCACCGGCTAATTTCCAGACTTCGTGCCTTCTTTCAAAGGAAAGCAGACCCGAAGGAGGCCAAAGAAG
AGCGGCAGAAGCTCTTGGAAGATGCTACCTCACTACAAAACAAACAGGGAGTTGTGGCAGGGTCCTGTAG
TAACTATGACTGCATGACTAAGCACACCCGCTCCAGTGCTGACGTTGAGACTGGCGACAATCCTCTGAAA
GCTGAGCCAAACCTTCCTGCAGCTGTGGAAGAACAAAGCCCTCGTGGATTGAACGCAGTCACAGTGGATA
ATGACCATGATGAAGAACCCTCAGAATCTCACATGAGAATTTTGCTTGCCTCTATCACCTCTCTAGTGGG
TGATGCTGACTACAATGGTCACGGATTTTCCTTCTCTCTAGACATTGCTTGTAAAGATTTCAAACCTTAT
AATGGTGACCTGGTAGAAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGA
AGCCTCTGAAACATTGCCATTTAAATGAGGTCCGTGTTACCAGAACAGATGGAAGCACTGGGGTGTTGGA
AGACACCATCTTTTTCACCTTGGATTCTCTTAAACTTCCTTCTGGATATGTGCCGCAACCAGATGATGTT
GTCAATGTGGTTGCAGTGCAGAGCATGCAATCCAACTATTTCTGGAGAGCAGTTGCAATGACCCCAGTAC
AAGTATTGTAG

Translation (236 aa):
MHRLISRLRAFFQRKADPKEAKEERQKLLEDATSLQNKQGVVAGSCSNYDCMTKHTRSSADVETGDNPLK
AEPNLPAAVEEQSPRGLNAVTVDNDHDEEPSESHMRILLASITSLVGDADYNGHGFSFSLDIACKDFKPY
NGDLVEIEFSDEQDTQSRRAILVKPLKHCHLNEVRVTRTDGSTGVLEDTIFFTLDSLKLPSGYVPQPDDV
VNVVAVQSMQSNYFWRAVAMTPVQVL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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