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Report for CCDS48798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48798.1 Public Mus musculus 11 Meikin 23 108 98 CCDS HistoryNCBI Gene:74847Re-query CCDS DB by CCDS ID:48798.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094193.2 ENSMUSP00000091745.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094193.2Link to Ensembl Protein Viewer:ENSMUSP00000091745.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094193Re-query CCDS DB by Protein ID:ENSMUSP00000091745
Original member NCBI NM_029105.2 NP_083381.1 Updated not alive Link to Nucleotide Sequence:NM_029105.2Link to Protein Sequence:NP_083381.1Re-query CCDS DB by Nucleotide ID:NM_029105Re-query CCDS DB by Protein ID:NP_083381
Current member NCBI NM_029105.3 NP_083381.1 Accepted alive Link to Nucleotide Sequence:NM_029105.3Link to Protein Sequence:NP_083381.1Re-query CCDS DB by Nucleotide ID:NM_029105Re-query CCDS DB by Protein ID:NP_083381Link to BLAST:NP_083381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083381.1 434 Q5F2C3-1 434 100% 0 0

Chromosomal Locations for CCDS 48798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54370669 54370792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54370884 54370977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54371738 54371819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54373500 54373560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54390467 54390598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54394632 54394751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54395546 54395585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54398456 54398520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54399813 54399889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54405878 54406033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54409650 54409730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54411796 54411915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54417730 54417850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54426648 54426679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGACAAGATATGGCATATGGGGCCCAGAGGGGACTATACCCGCAAGAAGAGGGCTGGTGAAAGGCTCA
ACCTCACCCCGAAGCCAGACCTGGCCCTCCCTGGGAGGACAGAGGCCCTGCCAGGTCTGAAGGGAAAGGG
CAAAGAGCAGGGATTGCGGAAAATTACTGAGAAGAAGGAATTGAGCAGACTCACAGGTAGCAGCTCACAG
CGGCCAAGTCTGTTAAGTGTTACAGGAGGGGAACACCTGCAAGAAAATAGCCCTGGCCAAGAGACCCCAG
AGGAAAAGACACCACCATGTGAAACAGTGACTGATACCTTTGAGATGGACAGCTTGTTGTCGAGTACTGA
GCTAGTTTCAGGACCAGCCGAGCAGGATGACTTTTCCAGCTGTCTCCCGAGTTGTTCAAATGCAGAGTTA
CATACAGAGAGCACCGATGAGAGAGGAAGTAGCTTCCCATCGCCAGAACTGTTCAGAGGGTCAGACTGCC
TGGATTGGGAGCATCCCAAGTTGGAAGATTACATGTTCTACAAGAATTCTACTCTTTTAGACACCAGTAA
AGCAGTAGTTATAGAGAAAGCGCCACAGTTTGCAAACCTCTCTGCAGTTCTGAGTTCCTCTTCAAAAAAC
TATGAGAAACGCCATAGAAAAATAGGGATGACATTAGCAGCCCAACATCTTTCTCCAGAACCAAAGTATG
CTTCAAATTTAGCATCAGTTGTAGATAATGCAGCTTCTGAGGTTGTATTTGCTGAGAAAACTGGCCCTCC
AACCACTGAAAAAACACAGAAAAAGCCTGAAAATGAATCTGAAGATAGTGGTCCGCTCGTTCAAACAAAG
TTGAGCTCCGGTCATCCAGACAACAAGGCTCTGTGCTCCCCTCTAAGTTCAGCTCTTGAAAGCACTGCAG
TCAGGTATACTCTGCTGCCTCAGCCCCTGGAACCTGTGCTGAAAAAAGGTTGTATTCTTCCTGATAAACA
AAGCAAAGCCCTGCTAACAAGTACCCCATCTTCAGACATAGCTGAGTTTGTGATTGATTTGTCTCCAGTG
CAAAATGTGTCTTTTGAAGAACTATTTCCAAATGTCAGCAATTATGTTAACTCAAGTGAAGTTGTTCCTG
TGTCAAGTTTGCAAGAAAGTTCATCAAATGAGTTTTCTCCAAACACATCAGAGATCTGTTGTATTATTAG
GTCATCACCAGGAACCAGACAGATGAGAAGGAAAGACCCTGCTGTGAAAAACAGATGTTCTCCTCCTAAA
GATGTTCCTCTAGATATTATAATGAAGACAAATGGCAGAACATAA

Translation (434 aa):
MDKIWHMGPRGDYTRKKRAGERLNLTPKPDLALPGRTEALPGLKGKGKEQGLRKITEKKELSRLTGSSSQ
RPSLLSVTGGEHLQENSPGQETPEEKTPPCETVTDTFEMDSLLSSTELVSGPAEQDDFSSCLPSCSNAEL
HTESTDERGSSFPSPELFRGSDCLDWEHPKLEDYMFYKNSTLLDTSKAVVIEKAPQFANLSAVLSSSSKN
YEKRHRKIGMTLAAQHLSPEPKYASNLASVVDNAASEVVFAEKTGPPTTEKTQKKPENESEDSGPLVQTK
LSSGHPDNKALCSPLSSALESTAVRYTLLPQPLEPVLKKGCILPDKQSKALLTSTPSSDIAEFVIDLSPV
QNVSFEELFPNVSNYVNSSEVVPVSSLQESSSNEFSPNTSEICCIIRSSPGTRQMRRKDPAVKNRCSPPK
DVPLDIIMKTNGRT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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