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Report for CCDS57336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57336.1 Public Mus musculus 5 Rnf4 23 108 98 CCDS HistoryNCBI Gene:19822Re-query CCDS DB by CCDS ID:57336.1Re-query CCDS DB by GeneID:19822See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030992.12 ENSMUSP00000030992.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030992.12Link to Ensembl Protein Viewer:ENSMUSP00000030992.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030992Re-query CCDS DB by Protein ID:ENSMUSP00000030992
Original member Current member EBI ENSMUST00000182047.1 ENSMUSP00000138411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182047.1Link to Ensembl Protein Viewer:ENSMUSP00000138411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182047Re-query CCDS DB by Protein ID:ENSMUSP00000138411
Original member Current member EBI ENSMUST00000182709.7 ENSMUSP00000138555.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182709.7Link to Ensembl Protein Viewer:ENSMUSP00000138555.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182709Re-query CCDS DB by Protein ID:ENSMUSP00000138555
Original member Current member NCBI NM_001304269.1 NP_001291198.1 Accepted alive Link to Nucleotide Sequence:NM_001304269.1Link to Protein Sequence:NP_001291198.1Re-query CCDS DB by Nucleotide ID:NM_001304269Re-query CCDS DB by Protein ID:NP_001291198Link to BLAST:NP_001291198.1
Original member Current member NCBI NM_001304270.1 NP_001291199.1 Accepted alive Link to Nucleotide Sequence:NM_001304270.1Link to Protein Sequence:NP_001291199.1Re-query CCDS DB by Nucleotide ID:NM_001304270Re-query CCDS DB by Protein ID:NP_001291199Link to BLAST:NP_001291199.1
Original member Current member NCBI NM_011278.5 NP_035408.1 Accepted alive Link to Nucleotide Sequence:NM_011278.5Link to Protein Sequence:NP_035408.1Re-query CCDS DB by Nucleotide ID:NM_011278Re-query CCDS DB by Protein ID:NP_035408Link to BLAST:NP_035408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291198.1 194 Q9QZS2 194 100% 0 0
NP_001291199.1 194 Q9QZS2 194 100% 0 0
NP_035408.1 194 Q9QZS2 194 100% 0 0

Chromosomal Locations for CCDS 57336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34342671 34342679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34346775 34346901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34348664 34348743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34349550 34349559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34349912 34350071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34350790 34350838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34351231 34351380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGAGTACAAGAAATCCTCAAAGAAAGCGGCGTGGTGGAACTGTGAATTCTAGACAAACCCAGAAGCGAA
CTCGGGAAACAACTTCGACCCCTGAGGTTTCCTTGGAAACAGAACCCATAGAACTTGTGGAAACTGTTGG
AGATGAAATTGTGGACCTCACCTGTGAATCTTTAGAGCCCGTGGTTGTGGACCTGACTCACAATGACTCT
GTTGTGATTGTTGAAGAAAGGAGAAGGCCAAGGAGAAATGGGAGGAGGTTGCGCCAAGACCATGCTGACA
GCTGTGTGGTGAGCAGTGATGATGAGGAGCTGTCTAGGGACAAAGATGTGTACGTGACTACCCATACTCC
TCGAAGCACCAAGGATGATGGAGCTACTGGACCCAGGCCCTCAGGTACCGTCAGTTGTCCTATCTGTATG
GATGGATACTCTGAGATTGTGCAGAATGGGCGTCTCATTGTTTCTACAGAATGTGGCCACGTCTTCTGTA
GCCAGTGCCTCCGTGATTCCCTTAAGAATGCTAACACTTGCCCAACTTGTAGGAAAAAGATCAACCATAA
GCGGTACCACCCCATTTATATATGA

Translation (194 aa):
MSTRNPQRKRRGGTVNSRQTQKRTRETTSTPEVSLETEPIELVETVGDEIVDLTCESLEPVVVDLTHNDS
VVIVEERRRPRRNGRRLRQDHADSCVVSSDDEELSRDKDVYVTTHTPRSTKDDGATGPRPSGTVSCPICM
DGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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