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Report for CCDS16816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16816.1 Public Mus musculus 2 Mgme1 23 108 98 CCDS HistoryNCBI Gene:74528Re-query CCDS DB by CCDS ID:16816.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028910.8 ENSMUSP00000028910.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028910.8Link to Ensembl Protein Viewer:ENSMUSP00000028910.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028910Re-query CCDS DB by Protein ID:ENSMUSP00000028910
Original member Current member EBI ENSMUST00000110027.1 ENSMUSP00000105654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110027.1Link to Ensembl Protein Viewer:ENSMUSP00000105654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110027Re-query CCDS DB by Protein ID:ENSMUSP00000105654
Original member Current member EBI ENSMUST00000110028.7 ENSMUSP00000105655.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110028.7Link to Ensembl Protein Viewer:ENSMUSP00000105655.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110028Re-query CCDS DB by Protein ID:ENSMUSP00000105655
Original member Current member NCBI NM_001289630.1 NP_001276559.1 Accepted alive Link to Nucleotide Sequence:NM_001289630.1Link to Protein Sequence:NP_001276559.1Re-query CCDS DB by Nucleotide ID:NM_001289630Re-query CCDS DB by Protein ID:NP_001276559Link to BLAST:NP_001276559.1
Original member Current member NCBI NM_001289631.1 NP_001276560.1 Accepted alive Link to Nucleotide Sequence:NM_001289631.1Link to Protein Sequence:NP_001276560.1Re-query CCDS DB by Nucleotide ID:NM_001289631Re-query CCDS DB by Protein ID:NP_001276560Link to BLAST:NP_001276560.1
Original member Current member NCBI NM_001355688.1 NP_001342617.1 Accepted alive Link to Nucleotide Sequence:NM_001355688.1Link to Protein Sequence:NP_001342617.1Re-query CCDS DB by Nucleotide ID:NM_001355688Re-query CCDS DB by Protein ID:NP_001342617Link to BLAST:NP_001342617.1
Original member Current member NCBI NM_028984.5 NP_083260.1 Accepted alive Link to Nucleotide Sequence:NM_028984.5Link to Protein Sequence:NP_083260.1Re-query CCDS DB by Nucleotide ID:NM_028984Re-query CCDS DB by Protein ID:NP_083260Link to BLAST:NP_083260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276559.1 338 Q9CXC3 338 100% 0 0
NP_001276560.1 338 Q9CXC3 338 100% 0 0
NP_001342617.1 338 Q9CXC3 338 100% 0 0
NP_083260.1 338 Q9CXC3 338 100% 0 0

Chromosomal Locations for CCDS 16816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144271980 144272484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144276315 144276531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144278994 144279126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144279481 144279642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGAAACTGCCTCTGACCTTCTGCAGGCTGCTTAGCAGGTTAAACAGATTTTCTGTAAAAGCAAGCCCTC
CTGTGAGTTTCTCCACTTTCTCTTATTTGTGTAGCCAGAAGAAGAAAAACTCTTACGAAGCAGTAGACCA
AGCGAAGTACTCTCGTTTAGTACGCTCTGTCTTGTCCAGAGGCCCGGCCCAGACTCCAGAGTCGTTGTTC
AAGGAAGATGATGTACTGTATGGACCAGTGAGTAAGCATAAGGCTGCAGAGCCGGAGCCACAGGCCAGAG
TCCCACAACACTGCTTTCCTATCTTCAATGAAGAGAGAACCGGGAAACCACACACAGATGCTTCTTCAAG
CCCTTTGAAGATCCCTTTGCAAAGGAACTCGATACCCAGTGTGACCCGCATCCTTCAGCAGACCATGCCA
CCTGAACAGAGCTTCTTTTTGGAGAGGTGGAAAGAGCGGATGGTTCTGGAGCTGGGAGAAGACGGGTTTG
CAGAATATACTTCAAATGTGTTTTTACAAGGCAAACAGTTCCATAAAGCCTTGGAAAGCATACTGTCACC
CCAGGAGAACCTAACAGGGGGAGAAGAGCACCCCCAGTGTGGCTACATCGAAAGCATCCAGCATATTCTG
ACAGAAATCAGTGGTGTGCAAGCTCTGGAGAGTGCCGTCCAGCATGAGGCCTTGAAGTATGTAGGGCTGC
TGGACTGTGTGGCTGAGTACCGGGGCAAGCTGTGTGTGATTGATTGGAAGACATCAGAAAAACCAAAACC
TTTAATTCGAAATACATATGACAACCCGCTGCAAGTTGTGGCGTACATGGGTGCCGTAAACCATGATGCC
CACTACAGTTTTCAGGTTCAGTGTGGATTAATTGTGGTGGCCTATAAGGATGGGTCCCCTGCGCACCCTC
ACTTCATGGATGAAGAGCTCTGTTCCAAGTATTGGGCCAAGTGGCTTCTCCGACTAGAAGAATATACAGA
AAAGCAAAAGAACCTGAGCGCTCCAGAGCCAGCGTAG

Translation (338 aa):
MKLPLTFCRLLSRLNRFSVKASPPVSFSTFSYLCSQKKKNSYEAVDQAKYSRLVRSVLSRGPAQTPESLF
KEDDVLYGPVSKHKAAEPEPQARVPQHCFPIFNEERTGKPHTDASSSPLKIPLQRNSIPSVTRILQQTMP
PEQSFFLERWKERMVLELGEDGFAEYTSNVFLQGKQFHKALESILSPQENLTGGEEHPQCGYIESIQHIL
TEISGVQALESAVQHEALKYVGLLDCVAEYRGKLCVIDWKTSEKPKPLIRNTYDNPLQVVAYMGAVNHDA
HYSFQVQCGLIVVAYKDGSPAHPHFMDEELCSKYWAKWLLRLEEYTEKQKNLSAPEPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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