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Report for CCDS23580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23580.1 Public Mus musculus 9 Lrrc2 23 108 98 CCDS HistoryNCBI Gene:74249Re-query CCDS DB by CCDS ID:23580.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035076.8 ENSMUSP00000035076.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035076.8Link to Ensembl Protein Viewer:ENSMUSP00000035076.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035076Re-query CCDS DB by Protein ID:ENSMUSP00000035076
Original member Current member NCBI NM_028838.2 NP_083114.2 Accepted alive Link to Nucleotide Sequence:NM_028838.2Link to Protein Sequence:NP_083114.2Re-query CCDS DB by Nucleotide ID:NM_028838Re-query CCDS DB by Protein ID:NP_083114Link to BLAST:NP_083114.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083114.2 371 Q8VDB8 371 99.7305% 0 1

Chromosomal Locations for CCDS 23580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110957822 110957946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110960802 110961009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110962515 110962671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110966441 110966577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110970014 110970159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110979470 110979625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110980827 110980963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110981630 110981679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGGACACAAAGTGGTCGTGTTTGACATCTCTGTTGTCAGAGCCTTATGGGAAACTCGTGTCAAGAAGC
ACAAAGCATGGCAGAAGAAGGAGGCAGAAAGGCTGGAGAAAAGCGCCCTGGAGAAGATAAAGGAGGAGTG
GGACTTTGTGGCCGAGTGCAGGAGGAAGGGCGTGCCCCAGGCTGAGTACTGCAAGAATGGCTTTGTGGAC
ACCAGCACAAGGCTCCTGGAAAAGATAGAGAGGAACTCTGTTTCCAGGCAGAGTGCGCGAGTCAAGGACA
GAGACAAACGGAGGAGTCCATTTGTGTTTGAACTTTCAGGGACACAGTGGAAGGAGCTGCCTGATTCGCT
GAAGGAGCAGACACACCTCAAAGAATGGTACATTCACAGTACCCTCATTCAGATCATTCCCACGTACATC
GAGCTGTTTCAAGCCATGAAAATTTTGGATTTGCCAAAAAACCAAATCACGTGTCTTCCAGCTGAAATTG
GTCGCTTAAAGAACCTGAAAGAACTCAATGTGAGTTTTAACCATTTGAAGAGTATTCCCCCGGAGCTAGG
AGACTGTGAGCATCTAGAGAGACTGGACTGTTCTGGGAATCTGGACCTGATGGATCTCCCCTTTGAATTA
AGTAATTTGAAGCAAGTTACATTTGTGGATATCTCTGCGAACAAGTTCTCCAGCGTTCCTATCTGTGTCC
TGCGGATGTGTCGTCTGCAGTGGCTGGATATCAGCAGCAACAATCTGAGTGACCTGCCACAAGATATAGA
CAGGCTGGAAGAGCTACAAGGTTTCCTGCTGTATAAAAACAAGCTGACCTACCTTCCTCAAGCCATGCTC
AACCTCAAAAAGCTCACCTTGCTGGTTGTCAGTGGGGATCACCTGGTGGAGGTCCCGACCGCCCTCTGCG
ATGCCTCCACGCCTTTGAAATTTGTAAGCCTTGTGGACAATCCCATTGATAAGACCGGATGTCAAGACAC
TGAAGACACAGTAGAGAGCGAGCGGGACCGCCAGCATTTTGATAAGGAATTTATGAAAGCATATATTGAA
GACCTTAAAGAAAGAGAAGCTGTTCCCAGTTATACGACCAAAGTGTCATTTAGTCTTCAGCTTTGA

Translation (371 aa):
MGHKVVVFDISVVRALWETRVKKHKAWQKKEAERLEKSALEKIKEEWDFVAECRRKGVPQAEYCKNGFVD
TSTRLLEKIERNSVSRQSARVKDRDKRRSPFVFELSGTQWKELPDSLKEQTHLKEWYIHSTLIQIIPTYI
ELFQAMKILDLPKNQITCLPAEIGRLKNLKELNVSFNHLKSIPPELGDCEHLERLDCSGNLDLMDLPFEL
SNLKQVTFVDISANKFSSVPICVLRMCRLQWLDISSNNLSDLPQDIDRLEELQGFLLYKNKLTYLPQAML
NLKKLTLLVVSGDHLVEVPTALCDASTPLKFVSLVDNPIDKTGCQDTEDTVESERDRQHFDKEFMKAYIE
DLKEREAVPSYTTKVSFSLQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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