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Report for CCDS49744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49744.1 Public Mus musculus 15 Gtsf1 23 108 98 CCDS HistoryNCBI Gene:74174Re-query CCDS DB by CCDS ID:49744.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023129.14 ENSMUSP00000023129.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023129.14Link to Ensembl Protein Viewer:ENSMUSP00000023129.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023129Re-query CCDS DB by Protein ID:ENSMUSP00000023129
Original member Current member EBI ENSMUST00000153930.7 ENSMUSP00000114244.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153930.7Link to Ensembl Protein Viewer:ENSMUSP00000114244.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153930Re-query CCDS DB by Protein ID:ENSMUSP00000114244
Original member Current member EBI ENSMUST00000136480.7 ENSMUSP00000116366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136480.7Link to Ensembl Protein Viewer:ENSMUSP00000116366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136480Re-query CCDS DB by Protein ID:ENSMUSP00000116366
Original member Current member EBI ENSMUST00000141364.7 ENSMUSP00000119234.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141364.7Link to Ensembl Protein Viewer:ENSMUSP00000119234.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141364Re-query CCDS DB by Protein ID:ENSMUSP00000119234
Original member Current member EBI ENSMUST00000146675.7 ENSMUSP00000122193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146675.7Link to Ensembl Protein Viewer:ENSMUSP00000122193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146675Re-query CCDS DB by Protein ID:ENSMUSP00000122193
Original member Current member NCBI NM_028797.1 NP_083073.1 Accepted alive Link to Nucleotide Sequence:NM_028797.1Link to Protein Sequence:NP_083073.1Re-query CCDS DB by Nucleotide ID:NM_028797Re-query CCDS DB by Protein ID:NP_083073Link to BLAST:NP_083073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083073.1 167 Q9DAN6 167 100% 0 0

Chromosomal Locations for CCDS 49744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103404826 103404842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103409624 103409718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103419958 103420021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103420473 103420556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103421190 103421316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103425431 103425531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103428340 103428355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGAAGACACTTACATCGACTCCCTGGACCCTGAAAAGTTATTACAGTGCCCCTATGATAAAAATCACC
AGATCAGGGCCTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAGAATCATCCTGATGTCGCAAACAA
ATTGGCTACTTGTCCCTTCAATGCTCGGCATCAGGTTCCCCGGGCTGAGATCAGTCATCACATCTCGAGC
TGTGATGACAAGAGCTGTATTGAGCAGGATGTGGTCAACCAAACCAGGAACCTTGGACAAGAGACTCTGG
CTGAGAGCACATGGCAGTGCCCTCCTTGTGATGAAGACTGGGATAAAGATTTGTGGGAACAGACTAGCAC
CCCATTTGTCTGGGGCACAGCCAGTTTCTGTGGCAACAACAGTCCTGCAAATAACATAGTTATGGAACAT
AAGAGTAACCTTGCTTCAGGCATGCGAGTTCCCAAGTCTCTGCCCTATGTTTTGCCATGGAAAAACAATG
GAAATGCACAGTAA

Translation (167 aa):
MEDTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISS
CDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTASFCGNNSPANNIVMEH
KSNLASGMRVPKSLPYVLPWKNNGNAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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