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Report for CCDS19482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19482.1 Public Mus musculus 5 Nudt9 23 108 98 CCDS HistoryNCBI Gene:74167Re-query CCDS DB by CCDS ID:19482.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031250.13 ENSMUSP00000031250.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031250.13Link to Ensembl Protein Viewer:ENSMUSP00000031250.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031250Re-query CCDS DB by Protein ID:ENSMUSP00000031250
Original member Current member NCBI NM_028794.4 NP_083070.2 Accepted alive Link to Nucleotide Sequence:NM_028794.4Link to Protein Sequence:NP_083070.2Re-query CCDS DB by Nucleotide ID:NM_028794Re-query CCDS DB by Protein ID:NP_083070Link to BLAST:NP_083070.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083070.2 350 Q8BVU5 350 100% 0 0

Chromosomal Locations for CCDS 19482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104047040 104047146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104050578 104050817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104054272 104054367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104055490 104055576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104058107 104058218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104059636 104059782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104061674 104061758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104064937 104065115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCCGGCCGCTCCCTGGGGCAGGCGGTAGCCACCGTGTCGCTCTCGGTGGCCCTCGCGTCAGTGACTG
TCCGGTCCTCAGCCTGCCGCGCCGTCCCCGCACCCAGAAACACATTTCCAACCTGTGGGTTCCACCTTAA
CGCCAACATCATGTCTGGTTCTAATGGTGCCAAAGAGAATTCCCACAACAAGGCCCGGACTTCTCCTTAC
CCAGGTTCAAAAGTCGAGCGAAGTCAGGTTCCGAATGAGAAGGTGGGCTGGCTCGTTGAGTGGCAGGACT
ACAACCCAGTGGAGTACACCGCGGTCTCTGTCCTGGCTGGACCCCAGTGGGCGGACCCTCAGATCAGTGA
AAGCAACTTCTCTCCCAAGTTTAATGAAAAGGACGGGCATGTTGAGAGAAAGAGCCAGAATGGCCTGTAT
GAGATTGAAAACGGAAGACCCAGAAACCCTGCAGGGAGGACAGGACTGGTTGGCCGGGGTCTTCTGGGGA
GATGGGGCCCAAATCATGCCGCAGATCCTATTATAACCAGGTGGAAAAGGGACGAGAGCGGGAATAAGAT
CACACACCCTGTCTCTGGGAAATGCATCTTGCAGTTCGTTGCCATCAAGAGGAAAGACTGTGGAGAGTGG
GCAATCCCGGGGGGGATGGTGGACCCCGGAGAGAAGATCAGTGCCACCCTGAAAAGGGAGTTTGGTGAAG
AAGCCCTGAACTCGTTACAGAAGTCCAGTGCCGAGAAGAGAGAGATCGAGGAGAAACTGCACGCGCTCTT
CAGCCAAGAGCATCTCGTGATATATAAGGGGTATGTTGACGACCCTCGGAACACTGACAATGCGTGGATG
GAGACGGAAGCCGTGAACTACCATGATGAAACAGGGGAGACCATGGACAACCTCACCCTGGAGGCCGGAG
ATGACGCAGGGAAGGTGAAGTGGGTGGACATCAGCGACCAGCTCAAGTTGTACGCCAGTCACTCTCAGTT
CATCAAACTCGTGGCAGAGAAACGAGATGCCCACTGGAGCGAGGACCACGCCGCTGACAGCCGTGGGCTA
TAG

Translation (350 aa):
MAGRSLGQAVATVSLSVALASVTVRSSACRAVPAPRNTFPTCGFHLNANIMSGSNGAKENSHNKARTSPY
PGSKVERSQVPNEKVGWLVEWQDYNPVEYTAVSVLAGPQWADPQISESNFSPKFNEKDGHVERKSQNGLY
EIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDESGNKITHPVSGKCILQFVAIKRKDCGEW
AIPGGMVDPGEKISATLKREFGEEALNSLQKSSAEKREIEEKLHALFSQEHLVIYKGYVDDPRNTDNAWM
ETEAVNYHDETGETMDNLTLEAGDDAGKVKWVDISDQLKLYASHSQFIKLVAEKRDAHWSEDHAADSRGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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