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Report for CCDS37070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37070.1 Public Mus musculus 15 Sybu 23 108 98 CCDS HistoryNCBI Gene:319613Re-query CCDS DB by CCDS ID:37070.1Re-query CCDS DB by GeneID:319613See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110269.7 ENSMUSP00000105898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110269.7Link to Ensembl Protein Viewer:ENSMUSP00000105898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110269Re-query CCDS DB by Protein ID:ENSMUSP00000105898
Original member NCBI NM_001032727.1 NP_001027899.1 Updated not alive Link to Nucleotide Sequence:NM_001032727.1Link to Protein Sequence:NP_001027899.1Re-query CCDS DB by Nucleotide ID:NM_001032727Re-query CCDS DB by Protein ID:NP_001027899
Current member NCBI NM_001032727.2 NP_001027899.1 Accepted alive Link to Nucleotide Sequence:NM_001032727.2Link to Protein Sequence:NP_001027899.1Re-query CCDS DB by Nucleotide ID:NM_001032727Re-query CCDS DB by Protein ID:NP_001027899Link to BLAST:NP_001027899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027899.1 593 Q8BHS8-3 593 100% 0 0

Chromosomal Locations for CCDS 37070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44672547 44673648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44675366 44675515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44677535 44677738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44683348 44683450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44718788 44718985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44787589 44787613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGACACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGA
CTCCTTCAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTGGAAGCGATGAAGACTTTACCAGGAAGAA
ATGCAGGATTGGAATGGTTGGTGAGGGAAGTATTCAGTCAGCTCGTCATAAAAAAGAACCCAAGGGAGGC
ATCATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGG
TCCACATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAA
TGGAGCATCATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAAGACCTTGTGTCTATGCTG
TGCAGGAATCCACTGAGCCCCAGTAACATCCACCCTAGTTACGCCCCTTCTTCTCCAAGTAGCAGCAACT
CCGGCTCCTACAAAGGAAGTGATTGTAGTCCAGTCATGAGAAGGTCTGGAAGATACATGTCTTGTGGCGA
AAATCACGGTGTCAAACCCCCAAATCCAGAACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGTG
AGGCACCTGAGGACCAAGCTGAAGGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGAAATCATGGAGC
TCAAGTCTCAGCTGGCTCGAATGAGGGAGGACTGGATTGAGGAAGAGTGCCACAGAGTGGAGGCTCAGTT
GGCACTCAAAGAAGCCAGAAAAGAGATTAAACAGCTCAAACAGGTCATCGAGACTATGAGGAGCAGCTTG
GCTGATAAAGATAAAGGCATTCAGAAGTACTTTGTGGACATAAACATCCAAAACAAGAAACTGGAGTCTC
TGCTTCAAAGCATGGAGATGGCACACAATAGTTCCCTGAGGGATGAACTGTGTCTTGACTTTTCCTTTGA
TTCCCCAGAGAAAAGTTTACCCCTGAGCAGCACATTTGACAAGTTGCCAGATGGGTTATCTCTGGAAGAA
CAGATAACAGAGGAAGGTGCTGACAGTGAGCTTCTGGTGGGAGACAGCATGGCTGAAGGCACAGATCTGT
TAGATGAGATGGTGACTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAGGGCC
ACAAGCCCTCAAGGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAG
ACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCTGCAGGACTACT
GTCCCACAAGCTCAGCATCTCCAGATGAATCTGGAGCTGACTCGATGGAAAGCTTCTCAGAATCTATCTC
TGCCTTAATGCTTGATTTAACTCCAAGAAGTCCTAACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCA
TTCAGCAAGGGGGCTATGGAAGCCCATGCAAATCGCCTCATGAGAGAGCTAGATTTTGCAGCCTACACAG
AAGAAAGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTT
CTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTACCCACTGTTCTGTGGGCATTCAGTACTCAGAGA
GGGGGTACAGATCCTGTCTACAACATCGGAGCTTTGCTCCGAGGTTGCTGTGTGGTGGCCCTACACTCAC
TACGCCGCACCGCTTTCCACATGAAAACCTAA

Translation (593 aa):
MDTVCKGNDDTGCPSSQSVSPVKTPSDTGHSPIGFCPGSDEDFTRKKCRIGMVGEGSIQSARHKKEPKGG
IIKPGSEADFSSSSSTGSISAPEVHMSTTGNKRASFSRNRGPHGRSNGASSHKSGSSPPSPREKDLVSML
CRNPLSPSNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRYMSCGENHGVKPPNPEQYLTPLQQKEVTV
RHLRTKLKESERRLHERESEIMELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL
ADKDKGIQKYFVDINIQNKKLESLLQSMEMAHNSSLRDELCLDFSFDSPEKSLPLSSTFDKLPDGLSLEE
QITEEGADSELLVGDSMAEGTDLLDEMVTATTTESSGLEFVHSTPGPQALKALPLVSHEEGIAVMEQAVQ
TDVVPFSPAISELIQSVLKLQDYCPTSSASPDESGADSMESFSESISALMLDLTPRSPNSAILLSPVEIP
FSKGAMEAHANRLMRELDFAAYTEERLDSVLSLSQGSVVRQYWSSNFLVDLLAVAAPVVPTVLWAFSTQR
GGTDPVYNIGALLRGCCVVALHSLRRTAFHMKT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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