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Report for CCDS52310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52310.1 Public Mus musculus 7 Ankrd42 23 108 98 CCDS HistoryNCBI Gene:73845Re-query CCDS DB by CCDS ID:52310.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118157.7 ENSMUSP00000113767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118157.7Link to Ensembl Protein Viewer:ENSMUSP00000113767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118157Re-query CCDS DB by Protein ID:ENSMUSP00000113767
Original member NCBI NM_028665.4 NP_082941.2 Updated not alive Link to Nucleotide Sequence:NM_028665.4Link to Protein Sequence:NP_082941.2Re-query CCDS DB by Nucleotide ID:NM_028665Re-query CCDS DB by Protein ID:NP_082941
Current member NCBI NM_028665.5 NP_082941.2 Accepted alive Link to Nucleotide Sequence:NM_028665.5Link to Protein Sequence:NP_082941.2Re-query CCDS DB by Nucleotide ID:NM_028665Re-query CCDS DB by Protein ID:NP_082941Link to BLAST:NP_082941.2

Chromosomal Locations for CCDS 52310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92584459 92584545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92590115 92590259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92591831 92591957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92605208 92605380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92610545 92610650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92612743 92612868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92614352 92614552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92619548 92619683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92623968 92624087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92625771 92625878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92631499 92631662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92636130 92636187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGCCTGGTGTGGCTAATCCAGGCCCCTCCAAGTCCCGTAGGGAGACTGCAGACTCAAGTTCCAGGAAGA
AGGTACATTTCAGTAGCATACATGATGCGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGTGGA
GCGTGGTGCCAACCTTAATGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACATTGGGCAGCACATTCT
GGAAGTTTAGAGTGCCTTCACTGGCTACTCTGGAGTGGTGCTGATGCCACACAGACAACTACAAGGGGAT
GGACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACAGGCTCTTATAATCAATGGAGC
CAACCTAGCAACTCAAGATGATCGTGGATGCACCCCACTACACCTTGCTGCTACTCATGGACACTCTTTT
TCTTTACAAATAATGCTGCGAAGTGGAGTGGATCCCAGCGTGACTGACAAGAGAGAGTGGAAACCTGTGC
ATTATGCATCTTTTCATGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCATCGAAGA
CGTGGACTACAATGGAAACCTCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCCATTGTTTGAAATTC
CTACTGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAAATGTATTGG
ACCTGGCCCAGCGGTTTTTGAAACAGAATGTTGTAGAGTTTATTCAGGGGGCTCAGTATGAAGGAAGCCA
TCCAGATGATCATGATGATTTAGCCTTTCCAGGTCATGTGGCTGCCTTTAAGGGTGACTTAGAAGTGCTT
AAGAAACTGATAGGAGACGGGGTAATCAATCTGAATGAACGCGATGATAATGGATCAACTCCCATGCATA
AAGCTGCTGGACAGGGCCACATTGATTGTTTGCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTAC
CAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGATTTGCCCATTTGGCTGCAGTGAAACTCTTG
GAGGGGCTACAGAAATATGAAATAGATGACATTGAGAGTGATAAAGATCATATAAATTTTTTTACAAGGC
ATGGTGTTGAAGGAAGCACCGATGCCAAGGATGACTTATGTCTGAGTGAATCAGACAAAGCAAATGCCAG
AATGAGAGCTCATAAGAAAATTGTAGAATTGAGACAACTTCTTGAAATCGCTGAGAGCAACTTTAAACAC
TTGGGTGGGATAACCGAAGAGGATTTAAAGCAGAAGAAAGAACAGCTGGAGTCTAAGAAGACCATCAACG
AGCTGCAGGGCCAGCTGGCCTATGAGCGACTCCGCAGGGAAAAGTTAGAGTGCCAGCTGGATGAGTATCG
AGTGGAAGTGGATCAACTCAAGGAAACGCTGCAGAAAATCCAGGTCACCAGTGTCGCGGCTATGGAAGAT
GACTCGTGTGAGTCTAGCAAAGAGAAGCGGCGAGTGAAAAAAAAAGTGTCACCTGGGGGTGTGTTTGTGA
GAAGGTACTAA

Translation (516 aa):
MPGVANPGPSKSRRETADSSSRKKVHFSSIHDAVRAGDVKQLSDIVERGANLNEVDALHQFTPLHWAAHS
GSLECLHWLLWSGADATQTTTRGWTAAHIAAIRGQDACLQALIINGANLATQDDRGCTPLHLAATHGHSF
SLQIMLRSGVDPSVTDKREWKPVHYASFHGRLGCLQLLVKWGCGIEDVDYNGNLPVHLAAMEGHLHCLKF
LLSRMNSATQALKAFNDNGENVLDLAQRFLKQNVVEFIQGAQYEGSHPDDHDDLAFPGHVAAFKGDLEVL
KKLIGDGVINLNERDDNGSTPMHKAAGQGHIDCLQWLIEMGAESNITNKAGETPSDVAKRFAHLAAVKLL
EGLQKYEIDDIESDKDHINFFTRHGVEGSTDAKDDLCLSESDKANARMRAHKKIVELRQLLEIAESNFKH
LGGITEEDLKQKKEQLESKKTINELQGQLAYERLRREKLECQLDEYRVEVDQLKETLQKIQVTSVAAMED
DSCESSKEKRRVKKKVSPGGVFVRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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