NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52329.1 Public Mus musculus 7 Atg16l2 23 108 98 CCDS HistoryNCBI Gene:73683Re-query CCDS DB by CCDS ID:52329.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120267.8 ENSMUSP00000112500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120267.8Link to Ensembl Protein Viewer:ENSMUSP00000112500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120267Re-query CCDS DB by Protein ID:ENSMUSP00000112500
Original member Current member NCBI NM_001111111.1 NP_001104581.1 Accepted alive Link to Nucleotide Sequence:NM_001111111.1Link to Protein Sequence:NP_001104581.1Re-query CCDS DB by Nucleotide ID:NM_001111111Re-query CCDS DB by Protein ID:NP_001104581Link to BLAST:NP_001104581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104581.1 623 Q6KAU8-1 623 100% 0 0

Chromosomal Locations for CCDS 52329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101289847 101289934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101290170 101290271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101290363 101290410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101290582 101290731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101291487 101291592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101291879 101291999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101292108 101292179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101292354 101292424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101293373 101293478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101293876 101293984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101294859 101294921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101296121 101296234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101296508 101296573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101296757 101297008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101297160 101297233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101299006 101299108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101300112 101300211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101301901 101302027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCACATCGTGCGGC
AGCTGCGGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCATCTCCT
AGAGAAGGCTGAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCATCTCCACC
CGACATGAGGACTGGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGA
GGGTGAAGTGGCAGCAGGAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAA
GAAGAGCGCAGCCCTAGACACCCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAG
GCCTGCGTGGTGCAGCTACAGGAGGCGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGA
ACGCAGCACAGAGAGAAGCCTATGAGACGCTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAG
GCTCCAGGAAGAGGCACGCGACTTGCTGGAGCAGCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGC
AATCTACGTAATGAGCGTAGAGAGAGGGCCAACCAGGCTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTA
AGCGGACTGTGAGCATCAGCGAGATCCCAAACACTCTAGAAGATGGGACGAAAGAAGAGACTGTGGCTCT
AGCTCCTGCCGCTCTGCCTGAGTTCTCAGAGAGTGAGACTTGTGAAAAATGGAAGAGGCCTTTCAGGTCT
GCCTCGGCCACCTCCCTGACACTGTCCCGCTGTGTGGATGTGGTGAAGGGGCTGTTGGACTTCAAGAAAA
GAAGAGGTCACTCGGTTGGGGGCGCACCTGAGCAGCGGTACCAAAGCATCCCTGTGTGTGTGTCTGCCCA
AATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCCATCTCTCTGAGGTCAATGCTGTTTGTTTTGGCCCC
AACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTGATCCACCTCTGGAATGTTGTAGGAGGTCGCC
TGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCACCAGTGTGGATTTTGACCCCTCAGGCTC
CCAGGTTTTGGCAGCTACTTACAACCAGGCTGCCCAGCTCTGGAAGGTGGGAGAGACTCAGTCCAAGGAA
ACATTGTCCGGACACAAGGACAAAGTGACTGCTGCCAAATTCAAGCTAACAAGGCACCAGGCAGTGACTG
GGAGCCGAGACCGGACAGTGAAGGAGTGGGACCTGGGCCGCGCCTACTGTTCCAGGACTATCAATGTACT
TTCCTACTGCAATGACGTGGTGTGCGGGGACCACATCATCATCAGTGGCCACAATGACCAAAAGATCCGG
TTCTGGGACAGCAGGGGCCCTCACTGCATCCAGGTCATCCCCGTGCAGGGCCGGGTTACCTCCCTGCACC
TCAGCTATGACCAGCTGCATCTGCTTAGCTGTTCCCGAGACAACACACTCAAGGTTATCGACCTGCGAAT
CAGCAATATCCGACAGGTGTTCAGGGCAGATGGCTTCAAGTGCAGTTCTGACTGGACCAAAGCTGTGTTC
AGCCCTGACAGAAGCTATGCACTGGCAGGCTCTTCAAACGGCGACCTGTACATCTGGGATGTGAACACCG
GGAAACTGGAGACCAGCCTACAGGGACCCCACTGCACTGCTGTTAATGCCGTGGCTTGGTGCTTCTCCGG
GAACCACGTTGTGAGTGTGGACCAAGGCAGGAAGGTGGTGCTCTGGCACTGA

Translation (623 aa):
MAGPGAPCDPCAPAAVWKRHIVRQLRHRDRTQKALFLELVPAYNHLLEKAELLAKFSEKLKSEPKDAIST
RHEDWREEVSGTGPDQVSSPASLRVKWQQEKKGLQLVCGEMAYQVVKKSAALDTLQSQLEERQDRLEALQ
ACVVQLQEARAQQSRQLEERQAENAAQREAYETLLQQAVHQEAALRRLQEEARDLLEQLVQRKARAAAER
NLRNERRERANQALVSQELKKAAKRTVSISEIPNTLEDGTKEETVALAPAALPEFSESETCEKWKRPFRS
ASATSLTLSRCVDVVKGLLDFKKRRGHSVGGAPEQRYQSIPVCVSAQIPSQAQDVLDAHLSEVNAVCFGP
NSSLLATGGADRLIHLWNVVGGRLEANQTLEGAGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKE
TLSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGDHIIISGHNDQKIR
FWDSRGPHCIQVIPVQGRVTSLHLSYDQLHLLSCSRDNTLKVIDLRISNIRQVFRADGFKCSSDWTKAVF
SPDRSYALAGSSNGDLYIWDVNTGKLETSLQGPHCTAVNAVAWCFSGNHVVSVDQGRKVVLWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH