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Report for CCDS8020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8020.1 Public Homo sapiens 11 SCGB1A1 24 110 108 CCDS HistoryNCBI Gene:7356Re-query CCDS DB by CCDS ID:8020.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278282.3 ENSP00000278282.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278282.3Link to Ensembl Protein Viewer:ENSP00000278282.2Re-query CCDS DB by Nucleotide ID:ENST00000278282Re-query CCDS DB by Protein ID:ENSP00000278282
Original member Current member NCBI NM_003357.5 NP_003348.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003357.5Link to Protein Sequence:NP_003348.1Re-query CCDS DB by Nucleotide ID:NM_003357Re-query CCDS DB by Protein ID:NP_003348Link to BLAST:NP_003348.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003348.1 91 P11684 91 100% 0 0

Chromosomal Locations for CCDS 8020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62419096 62419150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62422221 62422408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62423059 62423091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGAAACTCGCTGTCACCCTCACCCTGGTCACACTGGCTCTCTGCTGCAGCTCCGCTTCTGCAGAGATCT
GCCCGAGCTTTCAGCGTGTCATCGAAACCCTCCTCATGGACACACCCTCCAGTTATGAGGCTGCCATGGA
ACTTTTCAGCCCTGATCAAGACATGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTGGACACCCTCCCC
CAAAAGCCCAGAGAAAGCATCATTAAGCTCATGGAAAAAATAGCCCAAAGCTCACTGTGTAATTAG

Translation (91 aa):
MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGAQLKKLVDTLP
QKPRESIIKLMEKIAQSSLCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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