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Report for CCDS50844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50844.1 Public Mus musculus 2 Col20a1 23 108 98 CCDS HistoryNCBI Gene:73368Re-query CCDS DB by CCDS ID:50844.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228434.1 ENSMUSP00000153871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228434.1Link to Ensembl Protein Viewer:ENSMUSP00000153871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228434Re-query CCDS DB by Protein ID:ENSMUSP00000153871
Original member Current member NCBI NM_028518.1 NP_082794.1 Accepted alive Link to Nucleotide Sequence:NM_028518.1Link to Protein Sequence:NP_082794.1Re-query CCDS DB by Nucleotide ID:NM_028518Re-query CCDS DB by Protein ID:NP_082794Link to BLAST:NP_082794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082794.1 1320 Q923P0-1 1320 100% 0 0

Chromosomal Locations for CCDS 50844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180986535 180986613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180989020 180989130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180992434 180992577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180992853 180993008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180994200 180994358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180994877 180994996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180995460 180995624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180996355 180996507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180996682 180996851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180997266 180997395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180998354 180998499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180998585 180998708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180999118 180999254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180999687 180999816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181000033 181000175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181000365 181000497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181000893 181001041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181001214 181001343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181002329 181002367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181003345 181003483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181006705 181006847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181007126 181007235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181007567 181007725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181007796 181007873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181008520 181008606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181009377 181009430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181013067 181013162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181013236 181013289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181013390 181013443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181013870 181013923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181014788 181014859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181015427 181015462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181015543 181015609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181015690 181015857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181016255 181016328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGAGCCTCCAAGGCTCCTACCAACACTTCTGCCTCTGGATGTTCTTGGGCACCACGTTGGCACTGGGGC
AGGGACAAGTAAGTAGCCGCCTGAGGCTGGCAGTACTGCCTGAGGACCAGCTGCAGATGAAGTGGAGGGA
AGCAGAGGGAAGTGGCCTTGGCTTCTTGGTGCAGGTGACACCTATGGCAGGGGACTTGGAGCAGGAGCTG
ATACTGACCACCAAGACCCCCAAGGCCACTGTGGGTGGCCTGAACCCTTCCAAGAGCTACACCTTGCAGA
TCTTTGAGCTCACTGACTCGGGGCCTATCCTGCTGGCACGAAGGGAGTTTGTGATTGAGGATCTGAAGAG
CCAATCTTTGGGCAGAGGCAGCCGGAGGCTGGCTGGAGCCACCCTGGAGCCTACCTCCTTGCCTCTGAGG
GGCCCAGACTCTGAGAAAACATCTGAGCCCAGCATTGCCTTTACCTTAAGCAGGGACCTGCCCATTCTTG
ATCACCCCCAGTTCCAATGTACACCCCCAACACCTGCTGATATAATCTTCCTGGTGGACGGGTCCTGGAG
CATCGGCCACAACCACTTCCAGCAGGTGAAAGACTTCCTGGCCAGCATCATCACACAATTTGCAATAGGA
CCAGATAAAGTCCAAGTAGGTCTGACACAGTACAGTGGAGACCCCCAGACCGAGTGGGACCTGAACTCCT
TCCAAACCAAGGAGCAAGTGCTAGCAGCTGTACACCACCTCCGCTACAAGGGAGGAAACACATTCACAGG
CCTTGCTCTAACCCATGTGCTGGAGCAGAACCTGAAGCCAGCAGCCGGTGTCCGTCCAGAGGCAGCCAAA
GTGTTGATTCTGGTGACAGATGGCAAGTCCCAGGATGATGTGCGCACAGCTGCCAGGATCCTTAAGGATC
AGGACATTGATGTCTTTGTTGTGGGTGTGAAGAATGTCGATGAGGCTGAGCTGAAGCTCCTGGCGTCCCA
GCCACTGGACATCACTGTCCACAACGTGCTGGACTTCCCTCAGCTGGACACCCTAGCTCCTCTGCTCAGC
CGACTCATTTGCCAAAAAATTCAGGGCAGAGGCCCAGTCAAACCAGCAGCAGGTACTCGGGTCCTGGACC
CCCTCCCCACGCCCACCAGACTGATCCTGACCCACGCCACCTCATCCAGTATCCACCTGTCTTGGACTCC
AGCCTTATACCCACCCCTCAAGTATCTAATTGTATGGCAGCCTTCTAGGGGTGGTGCCCCCAAGGAGGTG
GTGGTGGAGGGGCCTGTCTCATCCATGGAGCTTGGAAACCTGACCTCCAGCACAGAATACTTGGTCTCTG
TGCTTCCTGTCTATGAGAGTGGGGTTGGCAAGAGCCTGCAAGGCCGGGCAACCACAGCACCCCTGCCTCC
ACCTGGGCCACTGACCCTAGCTGCAGTGACACCCAGAACTCTCCACGTCACCTGGCCGCCCTCTGCTGGG
GTCACTCAGTACTTGGTGCAGTACTTGCTGGCTACCTCCACTGGGGAGGAGCAAAAGAGAGAGGTACATG
TGGGACAGCCTGAGGTACTGCTGGATGGTCTGGAGCCTGGCCAGGACTATGATGTCTCAGTGCAGAGCCT
TCGGGGACCAGAGGCCAGCGAGGTCCAGAGCATCCGTGCCAGGACCTCTGCCCTGGGGCCCCCAAGACAC
CTGACTTTCTCAGATGTTCGCTACAACTCAACCTGTGTGTCCTGGGAAGCCCAGAGGCCTGTGCGCCTGG
TCAAGGTCAGCTACATCTCTAGTGATGGCAGCCACTCTGGGCAGACTCAGGTTCCTGGGAACCTTACTTC
AGCTACTCTGGGCCCACTTTCTTCCTCTACCATGTACACCGTCAGAGTCACCTGTTTTTACCTTGGGGGT
GGTTCCTCCGTGCTGACTGGCCATGTAACCACACAGAAAGCTCCTAGCCCTGGCCAGCTGTCTGTGATGG
AGCTCCCGGGAGATGCAGTAAAGCTGTCATGGCTGGCCACTGCCTTGTCTGGTGTACTTGTTTATCAGAT
CAAGTGGATGCCCTTGGGAGAAGGGAAGGCCCGTGAGATCTCTGTCCCAGGGACCCTTGGCACAGCCACC
TTGCCTGGCCTGATGAAACATGTGGAATATGAGATCACCATCCTTGCCTACTACAGGGACGGCACTCGCA
GCGACCCCGTGTCCCTCCGCTACACCCCCTCTGCAGCAAGCAGAAGCCCCCCATCCAGCCTGGCCTTGTC
CTCGGAGACCCCCAACAGCCTGCAGGTCAACTGGACACCACCAAGTGGCCATGTCCTCCATTACCGGCTC
AACTACACACTGGCCTCAGGCTCTGGACCAGAGAAATCGATCTCTGTACCAGGCACCAGGAGCCATGCCG
TGCTTCGTGATCTGATGTCTGCCACGAAGTACAGGGTCCTGGTCTCAGCTGTCTACAGAGCAGGGGAGAG
CATGGCAGTGTCTGCCACATACCGCACAGCAGCCTGCCCAGCCCTGCACCCGGACAGTTCCCTCTCAGGG
TTTGACCTGATGGTGGCCTTTGGCCTCGTGGCAAAGGAGTATGCCTCTATTCGAGGAGTTGCCATGGAGC
CCTCAGCCTTGGGTGTGGTCCCAACCTTCACTCTCTTCAAGGATGCTCAACTGATGCGTCGGGTCAGTGA
CATCTACCCAGCAACCCTGCCACCAGAACACACCATTGTCTTCCTTGTGCGTCTACTCCCTGAGACACCC
CGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGAAGATTTCCAGCCCATCCTCGGGGTTCTGCTGGATG
CTGGCAGAAAGTCTCTGACTTACTTCAACCATGATTCCCGGGCAGCCTTGCAGGAGGTCACCTTTGACCT
GCAGGATGCAAAGAAGATCTTCTTTGGAAGCTTCCACAAGGTACATATAGCTGTAGGCCACTCTAAGGTC
AGACTCTATGTGGACTGTCGGAAGGTGGCCGAGCGTCCCATTGGGGATGCTGGCAGCCCACCCACAGGTG
GTTTCATCACACTAGGGAGGCTAGCCAAGGCCAGAGGGCCACGGAGCAGCTCAGCCACATTCCAGCTCCA
GATGTTGCAAATCGTGTGCAGTGATACCTGGGCAGACAAGGACAGGTGTTGTGAGATTCCTGCACTGAGG
GATGGAGAGACGTGCCCGGCCTTCCCTTCAGCCTGTGCCTACTCATCTGAGACCCCTGGGCCACCAGGGC
CCCAAGGCCCTCCGGGTCTCCCTGGAAGGAACGGCCCTCCAGGACAGCAGGGGCACCCAGGGCCCAAGGG
GGAGCCGGGCCCACCTGGACAAACAGGACCTGAAGGCCCTGGAGGTCAGCAGGGGTCACCAGGGACCCAG
GGCCGCGCAGTCCAGGGACCCATGGGGCCACCAGGAGCCAAAGGAGAGAAGGGGGATCAGGGACTTTCAG
GCTTGCAGGGCCTCTCTGGCCAGCAAGGCATCCCTGGGAAAACTGGCCTACAGGGACCAAAGGGCATGAG
AGGACTGGAGGGACCTGCTGGCCTGCCAGGACCACCTGGCCCCAGGGGGTTCCAGGGCTTGGCAGGGGCC
AGGGGCACCAATGGGGAGCGAGGAGCCCCAGGAGCTGTGGGTCCCACAGGTCTACCAGGGTCCAAAGGTG
AACGAGGAGAGAAGGGAGAGCCACAGTCCCTTGCCACCATCTTCCAGCTGGTGAGCCAGGCCTGCGAGTC
AGCCATACGGACACATGTGCTGAAGCTGAATTCCTTCCTCCATGAGAATGCCCGTCCCCCAATGCCCTTC
ATGGCAGAGACAGCTAAGCTAGGCAGACCCAGATCTATAGATCCTGGATTACACAACGAGGCTCTACTTC
CTGGAGACTGGGGACATATCCTCCGCCCTGAGGACCAAGGTGAGCCTGTGACTATCAGCCACACAAGCAA
CCCTAGACTGCAGGAGGTGCAGACCCCAGAATCCCTGGAGTGA

Translation (1320 aa):
MSLQGSYQHFCLWMFLGTTLALGQGQVSSRLRLAVLPEDQLQMKWREAEGSGLGFLVQVTPMAGDLEQEL
ILTTKTPKATVGGLNPSKSYTLQIFELTDSGPILLARREFVIEDLKSQSLGRGSRRLAGATLEPTSLPLR
GPDSEKTSEPSIAFTLSRDLPILDHPQFQCTPPTPADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIG
PDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTFTGLALTHVLEQNLKPAAGVRPEAAK
VLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVHNVLDFPQLDTLAPLLS
RLICQKIQGRGPVKPAAGTRVLDPLPTPTRLILTHATSSSIHLSWTPALYPPLKYLIVWQPSRGGAPKEV
VVEGPVSSMELGNLTSSTEYLVSVLPVYESGVGKSLQGRATTAPLPPPGPLTLAAVTPRTLHVTWPPSAG
VTQYLVQYLLATSTGEEQKREVHVGQPEVLLDGLEPGQDYDVSVQSLRGPEASEVQSIRARTSALGPPRH
LTFSDVRYNSTCVSWEAQRPVRLVKVSYISSDGSHSGQTQVPGNLTSATLGPLSSSTMYTVRVTCFYLGG
GSSVLTGHVTTQKAPSPGQLSVMELPGDAVKLSWLATALSGVLVYQIKWMPLGEGKAREISVPGTLGTAT
LPGLMKHVEYEITILAYYRDGTRSDPVSLRYTPSAASRSPPSSLALSSETPNSLQVNWTPPSGHVLHYRL
NYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESMAVSATYRTAACPALHPDSSLSG
FDLMVAFGLVAKEYASIRGVAMEPSALGVVPTFTLFKDAQLMRRVSDIYPATLPPEHTIVFLVRLLPETP
REAFALWQMMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEVTFDLQDAKKIFFGSFHKVHIAVGHSKV
RLYVDCRKVAERPIGDAGSPPTGGFITLGRLAKARGPRSSSATFQLQMLQIVCSDTWADKDRCCEIPALR
DGETCPAFPSACAYSSETPGPPGPQGPPGLPGRNGPPGQQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQ
GRAVQGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRGLEGPAGLPGPPGPRGFQGLAGA
RGTNGERGAPGAVGPTGLPGSKGERGEKGEPQSLATIFQLVSQACESAIRTHVLKLNSFLHENARPPMPF
MAETAKLGRPRSIDPGLHNEALLPGDWGHILRPEDQGEPVTISHTSNPRLQEVQTPESLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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