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Report for CCDS56665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56665.1 Public Mus musculus 1 1700056E22Rik 23 108 98 CCDS HistoryNCBI Gene:73363Re-query CCDS DB by CCDS ID:56665.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050306.7 ENSMUSP00000055787.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050306.7Link to Ensembl Protein Viewer:ENSMUSP00000055787.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050306Re-query CCDS DB by Protein ID:ENSMUSP00000055787
Original member Current member NCBI NM_028516.1 NP_082792.1 Accepted alive Link to Nucleotide Sequence:NM_028516.1Link to Protein Sequence:NP_082792.1Re-query CCDS DB by Nucleotide ID:NM_028516Re-query CCDS DB by Protein ID:NP_082792Link to BLAST:NP_082792.1

Chromosomal Locations for CCDS 56665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 184033156 184033860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTCGCTGCCCCTCCGGCTGCCCTACTGCTCTCCCGCGCGGCGGCTGCGCGCCGTGCTCTTGTTCCCCT
ACTTCCGTGACCCTGTCACTCCTCCGCCGTCCCCAACCTGTTCTCAGGAGCCCGACTCCGATCCCGAAGG
CGGCACTCCGGAGAGCTACTCGGAGGAGGACGCCTGGCTCTGTGAGAGCAGCCACTGGGGGCCGGTGTTG
AAGGGCAGCGTGGGCGCCGTCCCGCAGAGCTGGGCGTGGCCGGGCCCTCCGAACGCCCCACAAGCCCCGC
AGCCCAGGCACCGACCTCCTCCCAACGCGGTCCCCGCTTCTCCCGCGGCCACCTCCCCCTGTGCGATGTT
TTGGAGCCCGCAGTCCATCCGCCCCCCGGTGCTGGGCCGCCCCCGGCCCTCAGTGGCGCAGGGCCCTCGG
CGAGCCAAGGAGCGCCAGCCTGGAACAGCAAGCGCCGGCGGGAAGGAGCCAGAGCTCGGGTTGAACAGCC
AGAATGAGCGGCGCTTGAGGAGCATGGAAGGGCCCACGCCAGCTCTCCCGATTCCCCGAACTTTGTCCAT
CAGAGGGGTCACTACTGGTCGGGGTATGTCACCGGTGAAGAGAAGTGGGAAGCTGAGCAAGCCTGCTAGC
GCCTTGCCAGAAAAATATCAGGGAAGGTACAGAAGAATGACCCTGGAATTCAAAGGAGTGGAAAAGCCCA
GATGA

Translation (234 aa):
MSLPLRLPYCSPARRLRAVLLFPYFRDPVTPPPSPTCSQEPDSDPEGGTPESYSEEDAWLCESSHWGPVL
KGSVGAVPQSWAWPGPPNAPQAPQPRHRPPPNAVPASPAATSPCAMFWSPQSIRPPVLGRPRPSVAQGPR
RAKERQPGTASAGGKEPELGLNSQNERRLRSMEGPTPALPIPRTLSIRGVTTGRGMSPVKRSGKLSKPAS
ALPEKYQGRYRRMTLEFKGVEKPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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