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Report for CCDS17326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17326.1 Public Mus musculus 3 Slc25a31 23 108 98 CCDS HistoryNCBI Gene:73333Re-query CCDS DB by CCDS ID:17326.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091184.8 ENSMUSP00000088723.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091184.8Link to Ensembl Protein Viewer:ENSMUSP00000088723.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091184Re-query CCDS DB by Protein ID:ENSMUSP00000088723
Original member Current member NCBI NM_178386.3 NP_848473.2 Accepted alive Link to Nucleotide Sequence:NM_178386.3Link to Protein Sequence:NP_848473.2Re-query CCDS DB by Nucleotide ID:NM_178386Re-query CCDS DB by Protein ID:NP_848473Link to BLAST:NP_848473.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848473.2 320 Q3V132 320 100% 0 0

Chromosomal Locations for CCDS 17326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40708992 40709226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40716516 40716643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40720491 40720608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40721507 40721661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40722626 40722751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40724868 40725068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTCGAACGAATCCTCCAAGAAGCAGTCTTCAAAGAAGGCGCTGTTCGATCCGGTGTCTTTCTCGAAGG
ACCTGCTGGCCGGCGGGGTCGCGGCCGCGGTGTCGAAGACAGCTGTGGCGCCCATCGAGCGTGTGAAGCT
GCTGCTGCAGGTGCAGGCGTCCTCCAAGCAGATAAGCCCTGAGGCGCGCTACAAGGGCATGCTGGACTGC
CTGGTGCGCATTCCTCGTGAGCAAGGATTTTTAAGTTATTGGCGTGGCAATTTGGCAAATGTTATTCGAT
ACTTTCCAACACAAGCCTTAAACTTCGCTTTTAAGGACAAATACAAAGAACTTTTCATGTCTGGTGTTAA
TAAAGAAAAACAGTTCTGGAGATGGTTTCTAGCAAACCTGGCTTCTGGAGGGGCTGCTGGAGCAACATCC
TTGTGTGTAGTATACCCACTAGATTTTGCCAGAACCCGATTAGGTGTTGATATTGGAAAAGGTCCTGAGC
AGCGGCAGTTCACGGGTTTGGGTGACTGCATTATGAAAATAGCCAAGTCAGATGGACTGATTGGTCTATA
CCAAGGGTTTGGTGTCTCTGTTCAGGGTATCATTGTTTACCGAGCCTCTTACTTTGGAGCTTATGACACC
GTTAAGGGCTTATTGCCAAAGCCAAAGGAAACCCCATTTCTTGTCTCTTTTATCATTGCTCAAATCGTGA
CTACCTGTTCTGGAATACTCTCCTATCCCTTTGACACAGTTAGAAGACGTATGATGATGCAGAGTGGGGA
ATCTGATCGGCAATATAAAGGAACCATAGACTGCTTTCTGAAAATCTACCGTCATGAAGGAGTTCCTGCC
TTCTTCCGTGGTGCCTTCTCCAACATCCTTCGTGGCACAGGGGGTGCTTTGGTCTTGGTGTTATATGATA
AAATCAAAGAGTTCCTCAACATTGATGTTGGAGGTAGTTCATCAGGAGATTAA

Translation (320 aa):
MSNESSKKQSSKKALFDPVSFSKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPEARYKGMLDC
LVRIPREQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKELFMSGVNKEKQFWRWFLANLASGGAAGATS
LCVVYPLDFARTRLGVDIGKGPEQRQFTGLGDCIMKIAKSDGLIGLYQGFGVSVQGIIVYRASYFGAYDT
VKGLLPKPKETPFLVSFIIAQIVTTCSGILSYPFDTVRRRMMMQSGESDRQYKGTIDCFLKIYRHEGVPA
FFRGAFSNILRGTGGALVLVLYDKIKEFLNIDVGGSSSGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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