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Report for CCDS11177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11177.1 Public Homo sapiens 17 UBB 24 110 108 CCDS HistoryNCBI Gene:7314Re-query CCDS DB by CCDS ID:11177.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302182.8 ENSP00000304697.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302182.8Link to Ensembl Protein Viewer:ENSP00000304697.3Re-query CCDS DB by Nucleotide ID:ENST00000302182Re-query CCDS DB by Protein ID:ENSP00000304697
Original member Current member EBI ENST00000395837.1 ENSP00000379178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395837.1Link to Ensembl Protein Viewer:ENSP00000379178.1Re-query CCDS DB by Nucleotide ID:ENST00000395837Re-query CCDS DB by Protein ID:ENSP00000379178
Original member Current member EBI ENST00000395839.5 ENSP00000379180.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395839.5Link to Ensembl Protein Viewer:ENSP00000379180.1Re-query CCDS DB by Nucleotide ID:ENST00000395839Re-query CCDS DB by Protein ID:ENSP00000379180
Original member Current member EBI ENST00000614404.1 ENSP00000478771.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614404.1Link to Ensembl Protein Viewer:ENSP00000478771.1Re-query CCDS DB by Nucleotide ID:ENST00000614404Re-query CCDS DB by Protein ID:ENSP00000478771
Original member Current member NCBI NM_001281716.2 NP_001268645.1 Accepted alive Link to Nucleotide Sequence:NM_001281716.2Link to Protein Sequence:NP_001268645.1Re-query CCDS DB by Nucleotide ID:NM_001281716Re-query CCDS DB by Protein ID:NP_001268645Link to BLAST:NP_001268645.1
Original member Current member NCBI NM_001281717.1 NP_001268646.1 Accepted alive Link to Nucleotide Sequence:NM_001281717.1Link to Protein Sequence:NP_001268646.1Re-query CCDS DB by Nucleotide ID:NM_001281717Re-query CCDS DB by Protein ID:NP_001268646Link to BLAST:NP_001268646.1
Original member Current member NCBI NM_001281718.1 NP_001268647.1 Accepted alive Link to Nucleotide Sequence:NM_001281718.1Link to Protein Sequence:NP_001268647.1Re-query CCDS DB by Nucleotide ID:NM_001281718Re-query CCDS DB by Protein ID:NP_001268647Link to BLAST:NP_001268647.1
Original member Current member NCBI NM_001281719.1 NP_001268648.1 Accepted alive Link to Nucleotide Sequence:NM_001281719.1Link to Protein Sequence:NP_001268648.1Re-query CCDS DB by Nucleotide ID:NM_001281719Re-query CCDS DB by Protein ID:NP_001268648Link to BLAST:NP_001268648.1
Original member Current member NCBI NM_001281720.2 NP_001268649.1 Accepted alive Link to Nucleotide Sequence:NM_001281720.2Link to Protein Sequence:NP_001268649.1Re-query CCDS DB by Nucleotide ID:NM_001281720Re-query CCDS DB by Protein ID:NP_001268649Link to BLAST:NP_001268649.1
Original member Current member NCBI NM_018955.4 NP_061828.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018955.4Link to Protein Sequence:NP_061828.1Re-query CCDS DB by Nucleotide ID:NM_018955Re-query CCDS DB by Protein ID:NP_061828Link to BLAST:NP_061828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268645.1 229 P0CG47 229 100% 0 0
NP_001268646.1 229 P0CG47 229 100% 0 0
NP_001268647.1 229 P0CG47 229 100% 0 0
NP_001268648.1 229 P0CG47 229 100% 0 0
NP_001268649.1 229 P0CG47 229 100% 0 0
NP_061828.1 229 P0CG47 229 100% 0 0

Chromosomal Locations for CCDS 11177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 16381908 16382597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCG
AAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGG
CAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTC
CTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGG
AGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCA
GAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAG
TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGA
CCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGG
CATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC
TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGCTGTTAA

Translation (229 aa):
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
YNIQKESTLHLVLRLRGGC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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