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Report for CCDS18435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18435.1 Public Mus musculus 4 Ift25 23 108 98 CCDS HistoryNCBI Gene:72938Re-query CCDS DB by CCDS ID:18435.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046558.7 ENSMUSP00000048810.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046558.7Link to Ensembl Protein Viewer:ENSMUSP00000048810.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046558Re-query CCDS DB by Protein ID:ENSMUSP00000048810
Original member Current member EBI ENSMUST00000106749.7 ENSMUSP00000102360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106749.7Link to Ensembl Protein Viewer:ENSMUSP00000102360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106749Re-query CCDS DB by Protein ID:ENSMUSP00000102360
Original member Current member NCBI NM_001355459.1 NP_001342388.1 Accepted alive Link to Nucleotide Sequence:NM_001355459.1Link to Protein Sequence:NP_001342388.1Re-query CCDS DB by Nucleotide ID:NM_001355459Re-query CCDS DB by Protein ID:NP_001342388Link to BLAST:NP_001342388.1
Original member Current member NCBI NM_001355460.1 NP_001342389.1 Accepted alive Link to Nucleotide Sequence:NM_001355460.1Link to Protein Sequence:NP_001342389.1Re-query CCDS DB by Nucleotide ID:NM_001355460Re-query CCDS DB by Protein ID:NP_001342389Link to BLAST:NP_001342389.1
Original member Current member NCBI NM_028394.3 NP_082670.1 Accepted alive Link to Nucleotide Sequence:NM_028394.3Link to Protein Sequence:NP_082670.1Re-query CCDS DB by Nucleotide ID:NM_028394Re-query CCDS DB by Protein ID:NP_082670Link to BLAST:NP_082670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342388.1 143 Q9D6H2 143 100% 0 0
NP_001342389.1 143 Q9D6H2 143 100% 0 0
NP_082670.1 143 Q9D6H2 143 100% 0 0

Chromosomal Locations for CCDS 18435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107262482 107262579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107273613 107273719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107275223 107275291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107277927 107277970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107279725 107279838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGAGGAAAGTGGATCTCTGCTCAGTCACTGAAGGGACAGAAGTGATTCTGGCCACATCGAGTGATGAAA
AGCACCCACCTGAAAACATCATTGATGGGAATCCGGAAACCTTTTGGACCACCACAGGCATGTTTCCCCA
GGAGTTCATTATTTGTTTTCACAAACACGTAAAGATTGAAAAGCTTGTGATACAAAGTTACTTGGTGCGG
ACTTTGAGGATTGAAAAGACCACATCTAAAGAGCCATTGGATTTTGAGCAGTGGGTTGAAAAAGATTTAG
TACACACAGAGGGGCAGCTTCAAAATGAAGAAATTGTGGCACGAGATGGCTACGCCACTTTCTTGAGATT
CATTATTGTCTCAGCATTTGATCATTTTGCATCTGTGCACAGCATTTCTGCAGAGGGACTAACAGTCTCA
AGTCTTCCTTAG

Translation (143 aa):
MRKVDLCSVTEGTEVILATSSDEKHPPENIIDGNPETFWTTTGMFPQEFIICFHKHVKIEKLVIQSYLVR
TLRIEKTTSKEPLDFEQWVEKDLVHTEGQLQNEEIVARDGYATFLRFIIVSAFDHFASVHSISAEGLTVS
SLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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