NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59469.1 Public Homo sapiens 4 USP17L28 24 110 108 CCDS HistoryNCBI Gene:728400Re-query CCDS DB by CCDS ID:59469.1See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 59469.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred, but it is supported by data in PMID:10936051.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 59469.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504543.1 ENSP00000423777.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504543.1Link to Ensembl Protein Viewer:ENSP00000423777.1Re-query CCDS DB by Nucleotide ID:ENST00000504543Re-query CCDS DB by Protein ID:ENSP00000423777
Original member Current member NCBI NM_001242331.1 NP_001229260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242331.1Link to Protein Sequence:NP_001229260.1Re-query CCDS DB by Nucleotide ID:NM_001242331Re-query CCDS DB by Protein ID:NP_001229260Link to BLAST:NP_001229260.1

Chromosomal Locations for CCDS 59469.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9348893 9350485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAGGACGACTCACTCTACTTGAGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTC
GGCCCGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATGTGAGAC
CCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAGGGAGAAGCTTCCTCTG
AGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATATGGGAAATACCTGCTACGTGAACGCTT
CCTTGCAGTGCCTGACATACACACCGCCCCTTGCCAACTACATGCTGTCCCGGGAGCACTCTCAAACGTG
TCATCGTCACAAGGGCTGCATGCTCTGTACTATGCAAGCTCACATCACACGGGCCCTCCACAATCCTGGC
CACGTCATCCAGCCCTCACAGGCATTGGCTGCTGGCTTCCATAGAGGCAAGCAGGAAGATGCCCATGAAT
TTCTCATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGGCACAAGCAGGTAGATCATCACTC
TAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTACTGGAGATCTCAAATCAAGTGTCTCCACTGC
CACGGCATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCTGGATATCCAGGCAGCTCAGAGTGTCC
AGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGAACTCAATGGAGAGAATGCCTATCATTGTGGTGTTTG
TCTCCAGAGGGCGCCGGCCTCCAAGACGTTAACTTTACACACCTCTGCCAAGGTCCTCATCCTTGTATTG
AAGAGATTCTCCGATGTCACAGGCAACAAGATTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGC
AGCCATACATGTCTCAGCCGAACACAGGACCTCTCGTCTATGTCCTCTATGCTGTGCTGGTCCACGCTGG
GTGGAGTTGTCACAACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCAGTGGTATAAAATGGAT
GATGCCGAGGTCACCGCCTCTAGCATCACTTCTGTCCTGAGTCAACAGGCCTACGTCCTCTTTTACATCC
AGAAGAGTGAATGGGAAAGACACAGTGAGAGTGTGTCAAGAGGCAGGGAACCAAGAGCCCTTGGCGCAGA
AGACACCGACAGGCGAGCAACGCAAGGAGAGCTCAAGAGAGACCACCCCTGCCTCCAGGCCCCCGAGTTG
GACGAGCACTTGGTGGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCTTCAAGAGCAAA
ACAAAACGAAGCCTGAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTCCCGACGTACTTGTGATTCA
TCAATCAAAATACAAGTGTGGGATGAAGAACCATCATCCTGAACAGCAAAGCTCCCTGCTAAACCTCTCT
TCGTCGACCCCGACACATCAGGAGTCCATGAACACTGGCACACTCGCTTCCCTGCGAGGGAGGGCCAGGA
GATCCAAAGGGAAGAACAAACACAGCAAGAGGGCTCTGCTTGTGTGCCAGTGA

Translation (530 aa):
MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPL
SSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPG
HVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHC
HGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVL
KRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD
DAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL
DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLS
SSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH