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Report for CCDS22819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22819.1 Public Mus musculus 9 Fam76b 23 108 98 CCDS HistoryNCBI Gene:72826Re-query CCDS DB by CCDS ID:22819.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059579.11 ENSMUSP00000062642.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059579.11Link to Ensembl Protein Viewer:ENSMUSP00000062642.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059579Re-query CCDS DB by Protein ID:ENSMUSP00000062642
Original member NCBI NM_176836.4 NP_789806.1 Updated not alive Link to Nucleotide Sequence:NM_176836.4Link to Protein Sequence:NP_789806.1Re-query CCDS DB by Nucleotide ID:NM_176836Re-query CCDS DB by Protein ID:NP_789806
Current member NCBI NM_176836.5 NP_789806.1 Accepted alive Link to Nucleotide Sequence:NM_176836.5Link to Protein Sequence:NP_789806.1Re-query CCDS DB by Nucleotide ID:NM_176836Re-query CCDS DB by Protein ID:NP_789806Link to BLAST:NP_789806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789806.1 339 Q80XP8-1 339 100% 0 0

Chromosomal Locations for CCDS 22819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 13827975 13828061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13828760 13828824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13829725 13829779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13830982 13831137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13832972 13833171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13835885 13835932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13836103 13836183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13836837 13836972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13839640 13839741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13844029 13844118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCGGCGTCGGCCTTGTACGCCTGCACCAAGTGCACGCAGCGCTACCCCTTCGAGGAGCTCTCGCAGG
GCCAACAGCTCTGCAAGGAATGTCGGATTGCACATCCTATTGTAAAATGTACTTACTGCAGATCAGAATT
TCAGCAGGAGAGTAAAACTAACACAATTTGTAAGAAGTGTGCTCAAAATGTCAAGCAATTTGGAACACCT
AAGCCTTGTCAGTACTGTAACATAATTGCAGCATTTATTGGTACCAAGTGTCAGCGTTGTACAAATTCAG
AAAAGAAATATGGAGCACCTCAGACCTGTGAGCAGTGCAAACAGCAGTGTGCTTTTGATCGCAAGGAGGA
AGGAAGAAGGAAAGTTGATGGGAAGTTGCTGTGCTGGCTCTGCACCTTGTCATACAAGAGAGTTTTACAG
AAGACAAAAGAACAGAGGAAGAGTTTGGGGTCTTCACATTCTAACTCCTCATCTTCATCTCTTACTGAGA
AAGACCAGCACCATTCTAAACACCACCACCACCACCACCATCACCATCACCGCCACAGCAGTGGCCACCA
CAAAGTCAGCAGTCTAAGTCCTGAGCAGGAGCAGGGACTGTGGAAACAGAGCCATAAATCCTCTGCAGCA
ATTCAGAATGAAACTCCAAAGAAAAAGCCCAAGTTGGAATCTAAGCCATCTAATGGAGATAGTAGCTCTA
TAAATCAGTCAGCAGATAGTGGGGGAACAGACAATTTTGTCCTTATCAGTCAACTGAAAGAAGAAGTGAT
GTCACTTAAACGTCTCTTACAGCAAAGAGACCAGACTATTTTGGAAAAAGATAAAAAGTTAACTGAACTG
AAGGCAGACTTTCAATACCAAGAGTCAAATTTGAGGACTAAGATGAACAGTATGGAAAAAGCGCACAAAG
AAACTGTGGAACAACTCCAGGCCAAAAACAGAGAACTACTCAAACAGGTTGCAGCCTTGTCTAAGGGTAA
AAAGTTTGACAAGAGTGGAAGCGTGCTAACATCTCCCTGA

Translation (339 aa):
MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTP
KPCQYCNIIAAFIGTKCQRCTNSEKKYGAPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQ
KTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHHHHHHRHSSGHHKVSSLSPEQEQGLWKQSHKSSAA
IQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTEL
KADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSVLTSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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