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Report for CCDS29003.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29003.2 Public Mus musculus 17 Lrpprc 23 108 98 CCDS HistoryNCBI Gene:72416Re-query CCDS DB by CCDS ID:29003.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 29003.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29003.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112308.8 ENSMUSP00000107927.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112308.8Link to Ensembl Protein Viewer:ENSMUSP00000107927.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112308Re-query CCDS DB by Protein ID:ENSMUSP00000107927
Original member Current member NCBI NM_028233.2 NP_082509.2 Accepted alive Link to Nucleotide Sequence:NM_028233.2Link to Protein Sequence:NP_082509.2Re-query CCDS DB by Nucleotide ID:NM_028233Re-query CCDS DB by Protein ID:NP_082509Link to BLAST:NP_082509.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082509.2 1392 Q6PB66 1392 100% 0 0

Chromosomal Locations for CCDS 29003.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 84705416 84705472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84705899 84706041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84707094 84707178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84708088 84708162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84710291 84710406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84710535 84710674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84712693 84712894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84716627 84716715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84722697 84722823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84726303 84726411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84726530 84726672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84731145 84731235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84731749 84731817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84740070 84740176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84740544 84740668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84748961 84749168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84750508 84750593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84751224 84751354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84752309 84752422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84752729 84752773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84753114 84753191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84753405 84753511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84754541 84754598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84756258 84756285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84761952 84762018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84764452 84764545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84766993 84767111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84769595 84769702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84770000 84770105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84770354 84770499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84770843 84770987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84771424 84771550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84772093 84772179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84773044 84773102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84773208 84773329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84775389 84775511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84776941 84777134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84790365 84790513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4179 nt):
ATGGCAGCCCTGCTGAGACCCGCGCGTTGGCTGCTCGGGGCCGCGGCGGCCCCGCGCCTCCCGCTGTCCC
TGCGCCTCCCTGCGGGCGTCCCGGGCCGGCTGTCCTCCGTCGTCCGGGTCGCGGCTGTTGGTAGCCGGCC
GGCTGCAGGAGAGCGTCTGAGCCAAGCCAGATTGTATGCCATCGTTGCTGAGAAAAGGGATCTTCAAGAG
GAGCCTGCTCCTGTGAGAAAGAACAGCAGTCAATTTGACTGGGCTCTGATGAGACTGGATAATTCTGTCC
GGAGAACAGGCCGCATCACAAAGGGGCTTCTGCAGAGAGTCTTTGAGAGCACGTGTAGCTCAGGTAGCCC
AGGGAGCAATCAAGCTCTGCTTCTGCTGCGCAGCTGTGGCTCGCTCCTGCCCGAACTGAGTCTCGCCGAG
AGGACAGAGTTTGCTCACAAGATCTGGGACAAACTTCAGCAGTTAGGTGTCGTATATGATGTCAGTCATT
ACAATGCTTTACTTAAAGTATATCTTCAAAATGAATACAAATTTTCACCTACTGACTTCCTGGCAAAGAT
GGAGGGAGCAAACATCCAACCAAATCGAGTAACATACCAGAGGCTGATAGCTGCCTACTGTAATGTTGGG
GACATTGAAGGTGCCAGCAAGATCCTTGGATTTATGAAAACGAAAGACCTTCCGATCACAGAGGCCGTGT
TCAGTGCTCTCGTCACAGGGCATGCGAGAGCTGGGGATATGGAAAATGCAGAAAATATTCTCACAGTGAT
GAAACAGGCCGGCATTGAGCCTGGCCCAGACACGTATCTGGCCTTGTTGAATGCACATGCTGAGAGGGGT
GACATTGGCCAGGTTAGGCAGATTCTGGAGAAAGTGGAGAAGTCAGACCATTACTTCATGGACCGCGACT
TCTTGCAGGTTATTTTTAGCTTCAGTAAGGCTGGCTACCCTCAGTATGTCTCAGAAATACTGGAGAAGAT
TACCTATGAGAGACGGTCTATTCCAGATGCAATGAACCTCATTTTGTTTTTAGCCACTGAGAAGTTAGAA
GACACTGCGTTCCAGGTTTTATTGGCATTACCCCTGTCCAAGGACGAGAGCTCCGATAACTTTGGCAGTT
TCTTTTTGCGGCACTGTGTGACTCTGGATTTGCCCCCTGAGAAGCTGATAGACTACTGTCGGAGGCTGAG
GGACGCCAAGCTGCACAGCTCCTCACTGCAGTTCACGCTGCACTGTGCTCTTCAAGCCAATAGGACAGCT
TTGGCAAAAGCAGTGATGGAGGCTTTGAGGGAAGAAGGGTTTCCTATCCGACCGCACTATTTCTGGCCGT
TGCTTGCTGGGCATCAGAAAACAAAAAATGTTCAAGGAATAATAGATATCCTCAAAATAATGAACAAAGT
GGGAGTGGATCCTGATCAGGAAACATATATAAACTATGTGTTTCCGTGCTTTGATAGTGCACAGTCAGTT
CGAGCTGCTTTGCAGGAAAATGAATGTCTCCTCGCAAGTAGTACCTTTGCTCAAGCTGAAGTGAAGAATG
AAGCAATAAATGGGAACTTACAGAACATTTTGTCATTTTTGGAATCGAATACATTGCCTTTCTCGTTTAG
TTCTTTGAGAAACAGCCTAATCCTAGGCTTCAGGAGGTCGATGAACATAGATCTTTGGAGCAAGATAACA
GAATTGTTGTACAAGGATGAACGCTATTGCTCAAAGCCTCCGGGACCAGCGGAAGCTGTTGGCTATTTTC
TTTATAACTTGATTGACAGCATGAGTGACTCAGAGGTACAGGCCAAGGAGGAGCGTTTGAGACAATACTT
CCATCAGCTGCAGGAGATGAATGTTAAAGTTCCTGAAAACATCTACAAAGGCATTTGTAATTTGCTGAAT
ACCTACCATGTTCCTGAATTGATTAAGGATATTAAGGTTCTGGTTGACAGAGAGAAGGTAGATTCTCAAA
AAACTTCTCAAGTTACCTCATCTGATTTGGAATCAACACTTGAGAAACTCAAAGCTGAAGGCCAACCTGT
AGGATCTGCCCTGAAGCAGCTCCTGCTGCTGCTCTGCTCAGAGGAGAATATGCAAAAGGCCCTTGAGGTG
AAAGCAAAATATGAGTCAGACATGGTTATTGGTGGCTATGCAGCATTAATAAATTTGTGCTGTCGACATG
ATAATGCAGAAGATGCGTGGAACTTGAAACAAGAAGTTGACCGCTTAGATGCTTCGGCTATTCTTGACAC
TGCCAAGTACGTAGCCCTTGTAAAAGTACTGGGAAAGCACAGCAGACTCCAAGATGCTATTAACATTCTA
AAGGAGATGAAAGAGAAGGATGTTGTTATCAAAGATGCAACAGTCTTGTCCTTTTTCCACATCCTCAATG
GTGCAGCTTTAAGAGGTGAAATTGAAACAGTAAAACAGCTGCATGAAGCCATCGTGACTCTTGGGTTGGC
AAAGCCGTCCAGCAACATAAGCTTCCCGTTGGTCACTGTGCACCTGGAAAAGGGTGACTTACCTGCTGCT
CTTGAAGCCAGCATTGCCTGCCATAAAAAATATAAAGTGTTACCCAGGATTCATGATGTCTTATGTAAGC
TAGTAGAGAAAGGCGAGACTGATTTGATCCAGAAAGCAATGGACTTTGTGAGCCAAGAACAAGGGGAGAT
GACGATGCTCTACGACCTCTTCTTTGCTTTCCTGCAGACGGGGAATTACAAAGAAGCTAAGAAGATCATT
GAGACTCCAGGCATTAGAGCTCGGCCTACAAGACTCCAGTGGTTTTGTGATCGATGCATTGCCAGTAATC
AGGTTGAAGCTCTTGAGAAGTTGGTAGAGCTGACTGAGAAGCTGTTTGAGTGTGACAGAGACCAGATGTA
CTACAACTTACTGAAGCTATACAAAATAAGCAGTGACTGGCAAAGAGCGGATGCTGCGTGGACCAAAATG
CAAGAAGAGAACATTATCCCTCGAGAGCGGACACTGCGGCTCTTAGCCGAGATCTTGAAAACCAGCAACC
AGGAAGTTCCTTTCGACGTTCCGGAGTTGTGGTTTGGAGATGACAGACCTTCCCTGAGTCCATCCTCACG
CTCAGCAGGAGAGGACGTTACTGAGAAGACGTTGTTGTCTAACTGCAAACTAAAGAAGAGTAAAGATGCA
TATAATATCTTCCTTAAAGCCGAAAAGCAAAACGTTGTATTTAGCAGTGAAACTTATAGCACCTTGATAG
GCTTGCTGCTGAGTAAGGACGACTTCACCCAAGCAATGCACGTGAAGGATTTCGCTGAGACCCACATCAA
GGGCTTCACACTGAACGATGCTGCCAACAGCCTCCTCATCATAAGGCAAGTTAGGCGGGATTATTTGAAA
GGGGCTCTGGCAACTCTGAGAGCAGCCTTGGATTTGAAGCAGGTTCCGTCCCAGATCGCCGTGACCCGCC
TCATCCAGGCGTTGGCCTTGAAGGGTGATGTGGAAAGCATAGAGGCCATTCAGAGAATGGTGGCTGGACT
TGACACGATTGGACTCTCAAAAATGGTTTTTATCAATAACATCGCTTTGGCCCAGATGAAGAATAATAAA
CTTGATGCTGCCATAGAAAACATTGAGCACCTGCTTGCTTCCGAGAACCAAGCCATAGAACCTCAGTACT
TTGGCTTGTCGTATCTATTCAGAAAAGTGATCGAAGAGCAGATGGAACCAGCGCTAGAGAAGTTAAGCAT
CATGTCTGAGAGAATGGCGAATCAGTTTGCACTTTACAAGCCCGTCACTGATCTATTCCTGCAGCTTGTG
GATTCAGGCAAGGTGGATGAGGCCAGAGCTCTCTTAGAGAGATGCGGTGCCATTGCCGAGCAGAGCTCGC
TTCTGTCGGTGTTCTGTCTGAGGACTTCTCAGAAACCGAAAAAGGCACCAGTTCTGAAGACTTTGTTAGA
ACTGATTCCTGAGTTACGTGATAACGATAAAGTATATTCTTGCAGCATGAAAAGCTATGCCTTAGACAAA
GATGTGGCCTCGGCTAAAGCACTGTATGAGTATTTGACAGCCAAGAACTTGAAGCTAGATGACCTGTTTC
TCAAGCGCTATGCAGCTTTGCTCAAGGATGTCGGCGAACCAGTCCCCTTCCCCGAGCCCCCTGAAAGCTT
TGCATTTTATATAAAGCAACTAAAGGAAGCAAGGGAAAGCCCTTCATGA

Translation (1392 aa):
MAALLRPARWLLGAAAAPRLPLSLRLPAGVPGRLSSVVRVAAVGSRPAAGERLSQARLYAIVAEKRDLQE
EPAPVRKNSSQFDWALMRLDNSVRRTGRITKGLLQRVFESTCSSGSPGSNQALLLLRSCGSLLPELSLAE
RTEFAHKIWDKLQQLGVVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEGANIQPNRVTYQRLIAAYCNVG
DIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILTVMKQAGIEPGPDTYLALLNAHAERG
DIGQVRQILEKVEKSDHYFMDRDFLQVIFSFSKAGYPQYVSEILEKITYERRSIPDAMNLILFLATEKLE
DTAFQVLLALPLSKDESSDNFGSFFLRHCVTLDLPPEKLIDYCRRLRDAKLHSSSLQFTLHCALQANRTA
LAKAVMEALREEGFPIRPHYFWPLLAGHQKTKNVQGIIDILKIMNKVGVDPDQETYINYVFPCFDSAQSV
RAALQENECLLASSTFAQAEVKNEAINGNLQNILSFLESNTLPFSFSSLRNSLILGFRRSMNIDLWSKIT
ELLYKDERYCSKPPGPAEAVGYFLYNLIDSMSDSEVQAKEERLRQYFHQLQEMNVKVPENIYKGICNLLN
TYHVPELIKDIKVLVDREKVDSQKTSQVTSSDLESTLEKLKAEGQPVGSALKQLLLLLCSEENMQKALEV
KAKYESDMVIGGYAALINLCCRHDNAEDAWNLKQEVDRLDASAILDTAKYVALVKVLGKHSRLQDAINIL
KEMKEKDVVIKDATVLSFFHILNGAALRGEIETVKQLHEAIVTLGLAKPSSNISFPLVTVHLEKGDLPAA
LEASIACHKKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMTMLYDLFFAFLQTGNYKEAKKII
ETPGIRARPTRLQWFCDRCIASNQVEALEKLVELTEKLFECDRDQMYYNLLKLYKISSDWQRADAAWTKM
QEENIIPRERTLRLLAEILKTSNQEVPFDVPELWFGDDRPSLSPSSRSAGEDVTEKTLLSNCKLKKSKDA
YNIFLKAEKQNVVFSSETYSTLIGLLLSKDDFTQAMHVKDFAETHIKGFTLNDAANSLLIIRQVRRDYLK
GALATLRAALDLKQVPSQIAVTRLIQALALKGDVESIEAIQRMVAGLDTIGLSKMVFINNIALAQMKNNK
LDAAIENIEHLLASENQAIEPQYFGLSYLFRKVIEEQMEPALEKLSIMSERMANQFALYKPVTDLFLQLV
DSGKVDEARALLERCGAIAEQSSLLSVFCLRTSQKPKKAPVLKTLLELIPELRDNDKVYSCSMKSYALDK
DVASAKALYEYLTAKNLKLDDLFLKRYAALLKDVGEPVPFPEPPESFAFYIKQLKEARESPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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