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Report for CCDS20875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20875.1 Public Mus musculus 7 Psg21 23 108 98 CCDS HistoryNCBI Gene:72242Re-query CCDS DB by CCDS ID:20875.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094793.11 ENSMUSP00000092387.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094793.11Link to Ensembl Protein Viewer:ENSMUSP00000092387.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094793Re-query CCDS DB by Protein ID:ENSMUSP00000092387
Original member Current member NCBI NM_027403.4 NP_081679.2 Accepted alive Link to Nucleotide Sequence:NM_027403.4Link to Protein Sequence:NP_081679.2Re-query CCDS DB by Nucleotide ID:NM_027403Re-query CCDS DB by Protein ID:NP_081679Link to BLAST:NP_081679.2

Chromosomal Locations for CCDS 20875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18647201 18647484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18650688 18651038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18652279 18652638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18654745 18655101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18656466 18656529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGGAGTGACCTCTGAACTTTTCACCAATGTCCTTATCCCTTGGCAGAGGGTCCTGTTCACAGCCTCCC
TCTTGACCTGCTGGCTTCTGTCCACCACTGCTAGTGTCACCATCCAGTCACCAAAACACGTAGTTGAAGG
AGAGAATATTCTTCTACAAGTTGACAATCTGCCAGAGAATCTTCTAGCTTTTGCCTGGTACAGAGGACTG
ATAAATTGGAGGCTCACAATTGCTCTGCATTTTCTGGACTATAGCACAAGTATGACAGGGCCTGAGCACA
GTGATAGAGAGATATTGTACAGCAACGGGTCCCTATGGATCCAAAATGTCACCCAGGAGGACACAGGATA
TTACATTTTTCAAACCATAAGTAACCATGGAGAACTGGAATCAAATACGTCCACATTTCTTCAGGTCTAC
TCCTCTCATTTCACCTGTGGGCGTCCTTCCTTCCCTGCCAAGCTCACTATTGAATCAGTGCCGCCCAGAG
TTGCTGAAGGAGGACGCGTTCTTCTCCGTGTTCACAATCTTCCAGAGTATCTTCAATTATTTTTTTGGTA
CAAAGGGGTGATTATGATTCACAAGGTTGAGATTGTCCGGCACAGAACACTCAAGAATTTAAGCGATCCA
GGCCCTGCCCACAGCGGTAGAGAGATAGTGTTCAGCAATGGATCCCTGCTGCTCCAGAATGTCACCTGGA
AAGACACAGGATTCTACACCCTACAAACTGTGAATGGATTTCGGGAAATGGAACTAGCACACATTTACCT
TCAGGTGGAGACCCCGTGCTGTGACCCTCTTGACTCTGCCCAACTCAGGATCGATCCAGTGACTCCGCAT
GCTGCTGAAGGGGAAAGTGTTCTTCTCCAGGTCCATAATCTACCAGAAGATCTGCAAACCTTTTCCTGGT
ACAAGGGTGTGGATAGCACTCCATCCTTTCAAATTGTAGAATATAGCAAAGCAATGAAGTCCATCATCAG
CGGCAGTGCATACAGCCGAAGAGAGATAGGGTACACTAATGGATCCCTGCTGCTCCAGGATGTCACTGAG
AAAGACTCTGGCTTGTACACACTAGTAACAATAGACAGCAATATGAGAGTTGAAACAGTGCATGTTCAAG
TCAACATCTACAAGCTTGTGACACAGCCTGCCATGAGAGTCACGGACAGCACAGTTAGAGTACAGAGCTC
AGTTGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAACAATCAGAGTCTG
CAGCTCACAGAGAGGATGACCCTGTCCCCATCAAAATGCCAACTCAGGATACATACTGTGAGGAAGGAGG
ATGCTGGAGAGTATCAATGTGAGGCCTTCAACCCAGTCAGCTCAAAGACCAGTCTCCCAGTCAGCCTGGC
CGTGATGAATGAGTGA

Translation (471 aa):
MGVTSELFTNVLIPWQRVLFTASLLTCWLLSTTASVTIQSPKHVVEGENILLQVDNLPENLLAFAWYRGL
INWRLTIALHFLDYSTSMTGPEHSDREILYSNGSLWIQNVTQEDTGYYIFQTISNHGELESNTSTFLQVY
SSHFTCGRPSFPAKLTIESVPPRVAEGGRVLLRVHNLPEYLQLFFWYKGVIMIHKVEIVRHRTLKNLSDP
GPAHSGREIVFSNGSLLLQNVTWKDTGFYTLQTVNGFREMELAHIYLQVETPCCDPLDSAQLRIDPVTPH
AAEGESVLLQVHNLPEDLQTFSWYKGVDSTPSFQIVEYSKAMKSIISGSAYSRREIGYTNGSLLLQDVTE
KDSGLYTLVTIDSNMRVETVHVQVNIYKLVTQPAMRVTDSTVRVQSSVVFTCFSDNTGVSIRWLFNNQSL
QLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVSLAVMNE


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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