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Report for CCDS36297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36297.1 Public Mus musculus 11 Spmap1 23 108 98 CCDS HistoryNCBI Gene:72215Re-query CCDS DB by CCDS ID:36297.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107576.1 ENSMUSP00000103202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107576.1Link to Ensembl Protein Viewer:ENSMUSP00000103202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107576Re-query CCDS DB by Protein ID:ENSMUSP00000103202
Original member NCBI NM_028156.2 NP_082432.2 Updated not alive Link to Nucleotide Sequence:NM_028156.2Link to Protein Sequence:NP_082432.2Re-query CCDS DB by Nucleotide ID:NM_028156Re-query CCDS DB by Protein ID:NP_082432
Current member NCBI NM_028156.3 NP_082432.2 Accepted alive Link to Nucleotide Sequence:NM_028156.3Link to Protein Sequence:NP_082432.2Re-query CCDS DB by Nucleotide ID:NM_028156Re-query CCDS DB by Protein ID:NP_082432Link to BLAST:NP_082432.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082432.2 155 Q9DAQ5 155 100% 0 0

Chromosomal Locations for CCDS 36297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97771577 97771737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97772716 97772815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97775652 97775858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGCTTGTTGTTACAACAGTCCTCGGCGACTCGAAAAATCTTTTGTTTTGGATGGGGTAGCTGTGAGCA
CAATGGCCCAGGCCTACAGCATCATGAGGCCCAAGCTGTGGTCTGCAATTCCGCCTTATAATCCTCAACT
GGACCACCACAGTCGTCGGTACTTCCGGAGCCGCGTGGTTCCGCCCATTTTGCGGAAAACTGATCAGGAT
CATGGTGGCACGGGAAGGGATGGCTGGATAGTGGATTATTTCCACATTTTTGGTCAAGGACAGCGATATC
TCAATAGGAGGAACTGGGCAGGAGCAGGGCATTCTCTCCAGCAGGTGAGTGGTCACGACTACTACAACTC
CAACCCGAAGGCCATCACTACGGGCTTAAATGGCCGATTCGGCTACCGCCGGAACACTCCAGCCCTCCGC
CAGCACACATCGGTGTTTGGAGAAGTCACACCATTTCCCATTTTCTGA

Translation (155 aa):
MACCYNSPRRLEKSFVLDGVAVSTMAQAYSIMRPKLWSAIPPYNPQLDHHSRRYFRSRVVPPILRKTDQD
HGGTGRDGWIVDYFHIFGQGQRYLNRRNWAGAGHSLQQVSGHDYYNSNPKAITTGLNGRFGYRRNTPALR
QHTSVFGEVTPFPIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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