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Report for CCDS6311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6311.1 Public Homo sapiens 8 TRHR 24 110 108 CCDS HistoryNCBI Gene:7201Re-query CCDS DB by CCDS ID:6311.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311762.2 ENSP00000309818.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311762.2Link to Ensembl Protein Viewer:ENSP00000309818.2Re-query CCDS DB by Nucleotide ID:ENST00000311762Re-query CCDS DB by Protein ID:ENSP00000309818
Original member Current member EBI ENST00000518632.2 ENSP00000430711.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518632.2Link to Ensembl Protein Viewer:ENSP00000430711.2Re-query CCDS DB by Nucleotide ID:ENST00000518632Re-query CCDS DB by Protein ID:ENSP00000430711
Original member Current member NCBI NM_003301.7 NP_003292.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003301.7Link to Protein Sequence:NP_003292.1Re-query CCDS DB by Nucleotide ID:NM_003301Re-query CCDS DB by Protein ID:NP_003292Link to BLAST:NP_003292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003292.1 398 P34981 398 100% 0 0

Chromosomal Locations for CCDS 6311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109087513 109088301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109119048 109119455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGAAAACGAGACAGTCAGTGAACTGAACCAAACACAGCTTCAGCCACGAGCAGTGGTGGCCTTAGAAT
ACCAGGTGGTCACCATCTTACTTGTACTCATTATTTGTGGCCTGGGCATTGTAGGCAACATCATGGTAGT
CCTGGTTGTCATGAGAACCAAGCACATGAGGACCCCCACAAACTGCTACCTGGTGAGCCTGGCAGTAGCT
GATCTCATGGTCTTGGTGGCCGCAGGCCTCCCCAACATAACAGACAGTATCTACGGTTCCTGGGTCTATG
GCTATGTTGGATGCCTCTGCATTACTTACCTCCAGTATTTGGGAATTAATGCATCCTCTTGTTCAATAAC
AGCCTTTACCATTGAGAGGTACATAGCAATCTGTCACCCCATCAAAGCCCAGTTTCTCTGCACATTTTCC
AGAGCCAAAAAGATTATCATCTTTGTCTGGGCTTTCACATCTCTTTACTGTATGCTCTGGTTCTTCTTGC
TGGATCTCAATATTAGCACCTACAAAGATGCTATTGTGATATCCTGTGGCTACAAGATCTCCAGGAATTA
CTACTCACCTATTTACCTAATGGACTTTGGTGTCTTTTATGTTGTGCCAATGATCCTGGCTACCGTCCTC
TATGGATTCATAGCTAGAATCCTTTTCTTAAATCCCATTCCTTCAGATCCTAAAGAAAACTCTAAGACAT
GGAAAAATGATTCAACCCATCAGAACACAAATCTGAATGTAAATACCTCTAATAGATGTTTCAACAGCAC
AGTATCTTCAAGGAAGCAGGTCACCAAGATGCTGGCAGTGGTTGTAATTCTGTTTGCCCTTTTATGGATG
CCCTACAGGACTCTAGTGGTTGTCAACTCATTTCTCTCCAGTCCTTTCCAAGAAAATTGGTTTTTGCTCT
TTTGCAGAATTTGCATTTATCTCAACAGTGCCATCAACCCGGTGATTTACAATCTCATGTCCCAGAAATT
CCGTGCAGCCTTCAGAAAGCTCTGCAACTGCAAGCAGAAGCCAACAGAGAAACCTGCTAACTACAGTGTG
GCCCTAAATTACAGCGTCATCAAGGAGTCAGACCATTTCAGCACAGAGCTTGATGATATCACTGTCACTG
ACACTTACCTGTCTGCCACAAAAGTGTCTTTTGATGACACCTGCTTGGCTTCTGAGGTATCCTTTAGCCA
AAGTTGA

Translation (398 aa):
MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVA
DLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFS
RAKKIIIFVWAFTSLYCMLWFFLLDLNISTYKDAIVISCGYKISRNYYSPIYLMDFGVFYVVPMILATVL
YGFIARILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWM
PYRTLVVVNSFLSSPFQENWFLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSV
ALNYSVIKESDHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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