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Report for CCDS24275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24275.1 Public Mus musculus 10 Slc39a5 23 108 98 CCDS HistoryNCBI Gene:72002Re-query CCDS DB by CCDS ID:24275.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042666.12 ENSMUSP00000037753.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042666.12Link to Ensembl Protein Viewer:ENSMUSP00000037753.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042666Re-query CCDS DB by Protein ID:ENSMUSP00000037753
Original member Current member EBI ENSMUST00000167859.1 ENSMUSP00000131736.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167859.1Link to Ensembl Protein Viewer:ENSMUSP00000131736.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167859Re-query CCDS DB by Protein ID:ENSMUSP00000131736
Original member Current member NCBI NM_001136237.1 NP_001129709.1 Accepted alive Link to Nucleotide Sequence:NM_001136237.1Link to Protein Sequence:NP_001129709.1Re-query CCDS DB by Nucleotide ID:NM_001136237Re-query CCDS DB by Protein ID:NP_001129709Link to BLAST:NP_001129709.1
Original member Current member NCBI NM_028051.3 NP_082327.2 Accepted alive Link to Nucleotide Sequence:NM_028051.3Link to Protein Sequence:NP_082327.2Re-query CCDS DB by Nucleotide ID:NM_028051Re-query CCDS DB by Protein ID:NP_082327Link to BLAST:NP_082327.2
Original member Current member NCBI NM_028092.3 NP_082368.1 Accepted alive Link to Nucleotide Sequence:NM_028092.3Link to Protein Sequence:NP_082368.1Re-query CCDS DB by Nucleotide ID:NM_028092Re-query CCDS DB by Protein ID:NP_082368Link to BLAST:NP_082368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129709.1 535 Q9D856 535 100% 0 0
NP_082327.2 535 Q9D856 535 100% 0 0
NP_082368.1 535 Q9D856 535 100% 0 0

Chromosomal Locations for CCDS 24275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128396047 128396190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128396466 128396656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128396751 128396831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128396989 128397147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128397231 128397324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128397688 128397828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128398068 128398237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128398405 128398567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128399272 128399452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128399804 128400087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGGGCCCCCAGTACATCATCTGCTGACTGGCCTATGTGTGGGGGTGGCCTTGGGCTGGGTAGGAGGCT
CCGTCCCAAACCTGGGCCCAGCTGAACAGGAACAGAACCACTACCTGGCCCAGTTGTTTGGTCTATATGG
AGAGAACGGGACACTGACTGCAGGGGGCCTGGCGCGGCTTCTCCACAGCCTAGGACTAGGCCGAGTCCAG
GGGCTCCGTCTGGGACACCATGAGCCTCCAACTGGGCGGGCTGCACCCACAAGTGGAGACAATTTCACAC
ACAGGCTGCAAGAGCCGGAGCTGAGTGTGGACATCTGGGCAGGAATGCCTCTGGGCCCTTCAGGTTGGGG
TGACCAGGAGGAATCAAAGGCTCCTGACCTGCACGGGTCAGGGCCCTCGAGCCTAGACCTCTTCCAGAGG
CTTCTGCTGTTGGACCATTCGTTGGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
TCAATTTTGGACTGAGCCCTGTTGCTCCTCTGACCCCTCGTCAGTTCGCTCTGCTGTGCCCAGCCCTGCT
TTATCAGATTGACAGCCGTGTTTGCATCAAAACCCCAGCTCCAGCACCTCCGGGGGATGTACTGTCTGCC
CTGCTTCACAGTGGCCTGGCAGTCCTGTTCCTCAGCCTCCCTGCTCCCCTCTCTCTGCTGTTGCTGCGGC
TCCTGGGACCTCGTCTGTTGCGGCCAGTGCTGGGCTTCCTGGGGGCCCTGGCCGTGGGTACTCTCTGTGG
GGATGCCCTGCTACACCTGCTCCCACATGCGCAAGGAGGGCGGCACACAGGACCTAGTGAGCAATCAGAG
GAGGACCTGGGTCCGGGACTGTCGGTGCTTGGTGGCCTCTTCCTGCTCTTCATGCTAGAGAACACACTAG
GACTTGTGCGGCACAGAGGGCTCAGGCCAAGATGCTGCAGGAACAAAAGGGATCTTGGAGAACCAAACCC
TGACCCAGAGGATGGCAGTGGGATGGTCCTTCGACCCCTACAGGCAGCTTCAGAACCAGAGGTTCAGGGC
CAGAGGGAGAACAGACAGTCCTCACCATCTCTAGCCCCTCCTGGGCACCAAGGCCACAGCCATGAGCACC
GGGGTGGCAGTATCGCATGGATGGTCCTCCTGGGAGATTGCCTGCACAACCTCACCGACGGGCTGGCATT
AGGTGCTGCTTTCTCAGACGGCTTCTCCAGTGGCCTCAGCACTACCCTAGCAGTCTTCTGCCACGAGCTG
CCCCACGAACTGGGTGACTTTGCCATGCTGCTTCAGGAAGGGTTATCCTTTCGGAAGCTGCTGCTGCTGA
GCCTCGTTTCTGGAGCCCTGGGACTGGGGGGTGCAGCCCTGGGGGTGGGGCTCAGCTTGGGCCCTGTGCC
CCTCACCCCCTGGGTGTTTGGGACCACGGCTGGGGTTTTCCTCTATGTGGCCCTAGTGGATATGCTGCCA
ACCCTGCTTCGTCCTCCTGAGCCCCTGCCTGTGTTCCACGTGCTTCTGCAGGGGCTGGGGCTGCTACTGG
GGGGCAGCCTCATGTTTACCATAGCCCTATTGGAGGAGCAGCTAGTGCCCACGGTTCCTGACGGCTGA

Translation (535 aa):
MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARLLHSLGLGRVQ
GLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGDQEESKAPDLHGSGPSSLDLFQR
LLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQFALLCPALLYQIDSRVCIKTPAPAPPGDVLSA
LLHSGLAVLFLSLPAPLSLLLLRLLGPRLLRPVLGFLGALAVGTLCGDALLHLLPHAQGGRHTGPSEQSE
EDLGPGLSVLGGLFLLFMLENTLGLVRHRGLRPRCCRNKRDLGEPNPDPEDGSGMVLRPLQAASEPEVQG
QRENRQSSPSLAPPGHQGHSHEHRGGSIAWMVLLGDCLHNLTDGLALGAAFSDGFSSGLSTTLAVFCHEL
PHELGDFAMLLQEGLSFRKLLLLSLVSGALGLGGAALGVGLSLGPVPLTPWVFGTTAGVFLYVALVDMLP
TLLRPPEPLPVFHVLLQGLGLLLGGSLMFTIALLEEQLVPTVPDG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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