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Report for CCDS23296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23296.1 Public Mus musculus 9 Rbpms2 23 108 98 CCDS HistoryNCBI Gene:71973Re-query CCDS DB by CCDS ID:23296.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055844.9 ENSMUSP00000057600.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055844.9Link to Ensembl Protein Viewer:ENSMUSP00000057600.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055844Re-query CCDS DB by Protein ID:ENSMUSP00000057600
Original member Current member NCBI NM_028030.3 NP_082306.2 Accepted alive Link to Nucleotide Sequence:NM_028030.3Link to Protein Sequence:NP_082306.2Re-query CCDS DB by Nucleotide ID:NM_028030Re-query CCDS DB by Protein ID:NP_082306Link to BLAST:NP_082306.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082306.2 206 Q8VC52 206 100% 0 0

Chromosomal Locations for CCDS 23296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65630829 65630897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65649349 65649426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65649967 65650005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65650562 65650624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65650933 65651083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65651547 65651704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65659135 65659197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGAGCAACCTGAAGCCGGACGTCGAGCACTGCACGGGCGCGGGCACCGGCAGCCCGCTGGAGGAGGAGG
TCCGCACACTGTTTGTCAGTGGCCTCCCTGTGGATATTAAACCTAGAGAACTCTACCTGCTCTTCCGTCC
ATTCAAGGGCTATGAAGGGTCCCTGATCAAGCTCACCTCAAGACAGCCTGTTGGTTTTGTGATCTTTGAC
AGCCGGGCAGGAGCGGAAGCAGCCAAAAACGCATTGAATGGTATTCGCTTTGATCCGGAGAACCCGCAGA
CCCTGAGGCTAGAGTTTGCCAAAGCCAACACCAAGATGGCCAAGAGCAAACTAATAGCGACACCAAATCC
CACCAGTGTCCACCCTGCTCTAGGAGCACACTTGATCGCCCGGGACCCTTATGACCTGATGGGGACTGCT
CTGATTCCTGCATCCCCAGAGGCCTGGGCCCCTTACCCTCTCTACACCACAGAGCTGACCCCAGCCATTT
CACATACCACGTTCACCTACCCAGCTGCCACTGCTGCTGCTGCTGCCGCCGCCACCCTACATGCTCAGGT
GCGCTGGTACCCCTCCTCTGACACCACCCAGCAAGGATGGAAGTACCGCCAGTTCTGTTAG

Translation (206 aa):
MSNLKPDVEHCTGAGTGSPLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFD
SRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPNPTSVHPALGAHLIARDPYDLMGTA
LIPASPEAWAPYPLYTTELTPAISHTTFTYPAATAAAAAAATLHAQVRWYPSSDTTQQGWKYRQFC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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