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Report for CCDS27830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27830.1 Public Mus musculus 15 Cers5 23 108 98 CCDS HistoryNCBI Gene:71949Re-query CCDS DB by CCDS ID:27830.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023762.12 ENSMUSP00000023762.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023762.12Link to Ensembl Protein Viewer:ENSMUSP00000023762.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023762Re-query CCDS DB by Protein ID:ENSMUSP00000023762
Original member Current member NCBI NM_028015.2 NP_082291.1 Accepted alive Link to Nucleotide Sequence:NM_028015.2Link to Protein Sequence:NP_082291.1Re-query CCDS DB by Nucleotide ID:NM_028015Re-query CCDS DB by Protein ID:NP_082291Link to BLAST:NP_082291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082291.1 414 Q9D6K9-1 414 100% 0 0

Chromosomal Locations for CCDS 27830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99736221 99736436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99738665 99738821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99739406 99739512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99739602 99739730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99740944 99741036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99741609 99741659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99745889 99745946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99747037 99747167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99751236 99751341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99772183 99772379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGCGACTGCAGCAGCGGAAACCCTGGGCCTCCTGTGGGGTTGGCTGTGGAGCGAGAGCTTCTGGCTGC
CTCAGAACGTGAGCTGGGCGGACCTGGAGGGCCCGGGCGACGGCTACGGCTACCCGCGCGCCCAGCACGT
GCTGTCGGTGTTCCCGCTGGCAGTGTGCATCTTCTCCGTGAGGATGCTGTTTGAGCGATTTATTGCCAAG
CCCTGTGCACTCCGTGTTGGCATTAAAGACAGTCCTGTCAATAAGGTGGAACCCAATGACACCCTTGAGA
AGGTGTTCGTATCTGTTACTAAGTATCCTGATGAGAAAAGGTTGAAGGGCCTATCAAAGCAACTGGACTG
GAGTGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGGAATCAGGACAAGCCTCCAACGCTCACGAAA
TTCTGTGAAAGCATGTGGAGATTCACTTATTATTTATGTATCTTCTGCTACGGAATCAGATTTCTCTGGT
CGATGCCTTGGTTCTGGGATACCCGACAGTGCTGGTACAACTATCCGTATCAGCCACTCTCGAGAGAGCT
GTATTACTATTACATCACACAACTGGCTTTCTACTGGTCTCTTATGTTTTCTCAGTTTATAGATGTTAAA
AGAAAGGACTTCCTGATGATGTTTATTCATCATATGATTGGCATTATGCTCACCACTTTCTCCTACGTCA
ACAACATGGTGCGAGTGGGAGCACTCATCTTCTGTCTGCATGACTTCGCAGACCCCTTACTGGAAGCTGC
CAAGATGGCCAATTATGCCAGACGTGAGCGGCTCTGTACCACCCTTTTTGTGATCTTTGGCGCAGCTTTT
ATAGTTTCTCGTCTAGCAATCTTCCCATTGTGGATTCTGAACACAACCCTCTTTGAAAGCTGGGAGATTA
TTGGGCCCTACCCTTCCTGGTGGCTCTTCAATGCCCTTCTCCTGATCCTGCAGGTGCTCCATGCCATCTG
GTCCTACCTAATTGTCCAGACTGCTTCCAAAGCCTTGAGCCGGGGAAAGGTGTCTAAGGATGACCGCAGT
GATGTAGAGAGCAGCTCAGAGGAAGAAGATGAGACAACCCACAAAAACAACCTCTCTGGCAGCAGCTCTA
GCAATGGTGCCAACTGCATGAACGGCTACATGGGAGGCAGCCACTTGGCTGAAGAGCAGGGGACTTGTAA
AGCCACTGGCAACCTACATTTTAGGGCCTCCCCACATCTACACTCCTGTGACTAG

Translation (414 aa):
MATAAAETLGLLWGWLWSESFWLPQNVSWADLEGPGDGYGYPRAQHVLSVFPLAVCIFSVRMLFERFIAK
PCALRVGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPPTLTK
FCESMWRFTYYLCIFCYGIRFLWSMPWFWDTRQCWYNYPYQPLSRELYYYYITQLAFYWSLMFSQFIDVK
RKDFLMMFIHHMIGIMLTTFSYVNNMVRVGALIFCLHDFADPLLEAAKMANYARRERLCTTLFVIFGAAF
IVSRLAIFPLWILNTTLFESWEIIGPYPSWWLFNALLLILQVLHAIWSYLIVQTASKALSRGKVSKDDRS
DVESSSEEEDETTHKNNLSGSSSSNGANCMNGYMGGSHLAEEQGTCKATGNLHFRASPHLHSCD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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