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Report for CCDS52180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52180.1 Public Mus musculus 7 Haus5 23 108 98 CCDS HistoryNCBI Gene:71909Re-query CCDS DB by CCDS ID:52180.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019697.8 ENSMUSP00000019697.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019697.8Link to Ensembl Protein Viewer:ENSMUSP00000019697.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019697Re-query CCDS DB by Protein ID:ENSMUSP00000019697
Original member Current member NCBI NM_027999.1 NP_082275.1 Accepted alive Link to Nucleotide Sequence:NM_027999.1Link to Protein Sequence:NP_082275.1Re-query CCDS DB by Nucleotide ID:NM_027999Re-query CCDS DB by Protein ID:NP_082275Link to BLAST:NP_082275.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082275.1 619 Q9D786-1 619 100% 0 0

Chromosomal Locations for CCDS 52180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30653977 30654055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30654170 30654302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30656949 30657078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30657162 30657273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30657599 30657744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30657838 30657918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30658503 30658665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30658853 30658983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30659063 30659126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30659289 30659413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30659540 30659597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30660094 30660176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30660259 30660328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30661629 30661788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30661869 30661974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30662936 30662960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30663095 30663127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30663223 30663285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30664831 30664928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGAACTAACGCAGAAAGAGCGGGAACTGAGTCGCTGGGCTGCTGAAGAGATGGAGGTGCCCCTAGCAG
CTCGCCCCCGGGAGTCGACGCTGCGTAGGCTGTGTCTGAGTCAGGGCGCTGACATCTGGGCCTACATTGT
GCAGCATGTGCGTAGTCAGAGGAATATCAAGAAGATCCAGGGAAACCTCCTCTGGCATGCCTATCAGGAC
AATCCAAAGATCCATCGGAAGTTGGAGCTGGAAGCCACTGTGGCCCGCCTTCGGGCAGAGAACCAAGAGC
TAGACCAGAGCCTGGAGCTGATGGATCAAGAGTCTGAAGCTCAGGATGTAGCTATGACACAGACACTGCA
GAGCCTGAAAGACACCCAGCATCGAGCTCTTCTCCTCCAGGCCCAAGCTGGGGCTGTACGAAGACAGCAA
CGTGGGTTGCAAGACCCCATGCAGCGGCTGCAGAATCAGCTCAAACATCTGCAGGACATGCAAAGGAAAG
CCAAAGTGGATGTGACCTTTGGACCTGTGGTGTCAGCAGCCCCAGCCCTAGAGCCTGAGGTGTTGGGTGA
TGTCCGGGCTGCCTGCACCCTCCGAACTCAATTCCTGCAGAACCTTCTGACTCCCCGGGCCAGGGGAGGC
AGCATCCTAAGCCCTTGTGATGACCACGTTGGAACATCCTATCAGCAGTGGCTGACCTCAGTTGAGACAC
TGCTGACAAACCACCCTGCGGGCCACGTCCTGGCCGCCTTGGAGTACCTGGCTGCAGAGCGGGAGTCAGA
GATCCGGTCCCTGTGTTATGGGGATGGGCTCAAAGAAGAGGAGCTGTCCAGGCCTCAGGCACCAGAATCT
TCAAATTCCAGCCAGGTTCTGCCGTCCACTGTTCATCTCATCCAGGAGGGCTGGCAGGCTGTAGGTGCAT
TGGTTACCCAGAGGAGTGCACTCCTGAGTGAGAGGCAAGTCCTGACTGGCCGCCTCCAGCGCCTAGTGGA
GGAGGTGAAGAGACTTTTGCTGGGATCCAGTGAGAGGAAAGTCCTGCTGCTGGGGCTTAGGCACAGTGGT
CTACTGGCAGAGCTCAAGGCTCTTCATGCCCAGAGCCAGGAACTGGAGAGTGCAGTTGGACAGCGGCATC
TTCTGCTGCGGGAGCTGCAGGCCAAGAGGCAGCGGATCCTACAGTGGCGTCAGCTGGTGGAGGACAGGCA
GGAACAGATCCGTCTGCTCATCAAGGGAAACTCAGCCAGCAAAACTCGCCTGAGCCGGGGTCCAGAGGAG
GTGTTGGCCCTGATTGACCAGAAGCTTGTCCCCACCTCTGAAGCTGTGGCACCACAGAGCCAGGAACTAC
TGCGATGCTTGAAGGAAGAAGCCAAACACCTGCCCCGAGTTCTCCTGGGCCCCCTGCTGCCATACCATGT
CAAAGGGCTGAAGCCGTTATCCAGGATTCTACCATCCATCCATCAGCTGCACCCCACTAACCCAAGGGCC
TCCAGCCTCATCTTGCTGAGTCACACACTGGGACTGCCTGTGGGGAAAGCATCTGAACTACTGCTTCCAA
GGGCTGCTTCTCTCCAACAAGATCTTCTGTTTCTCCAAGACCAGTTGGGTCTCCGAAGAGGAAATCTCTG
TGTGAAGACCAGTCTGCCTCCGGGACCATCCACCCAGGAGCTGCTGCAGATGCAGGTGTCCCAGGAAAAG
GAGCAGAATGAGAACGTGGGGCAGACCCTGAAGAAACTGTCAAATCTGCTGAAACAGGCACTGGAGCAAA
TCCCTGAGCTACAGGGGATCGTTCAGGACTGGTGGGAACAGCCGAGCCAAGCTGCCCTCCCTGAGGAGAT
CTGTCAGGGCCTGTCTCTGCCCCAGTGTCAGCTGCGCTGA

Translation (619 aa):
MELTQKERELSRWAAEEMEVPLAARPRESTLRRLCLSQGADIWAYIVQHVRSQRNIKKIQGNLLWHAYQD
NPKIHRKLELEATVARLRAENQELDQSLELMDQESEAQDVAMTQTLQSLKDTQHRALLLQAQAGAVRRQQ
RGLQDPMQRLQNQLKHLQDMQRKAKVDVTFGPVVSAAPALEPEVLGDVRAACTLRTQFLQNLLTPRARGG
SILSPCDDHVGTSYQQWLTSVETLLTNHPAGHVLAALEYLAAERESEIRSLCYGDGLKEEELSRPQAPES
SNSSQVLPSTVHLIQEGWQAVGALVTQRSALLSERQVLTGRLQRLVEEVKRLLLGSSERKVLLLGLRHSG
LLAELKALHAQSQELESAVGQRHLLLRELQAKRQRILQWRQLVEDRQEQIRLLIKGNSASKTRLSRGPEE
VLALIDQKLVPTSEAVAPQSQELLRCLKEEAKHLPRVLLGPLLPYHVKGLKPLSRILPSIHQLHPTNPRA
SSLILLSHTLGLPVGKASELLLPRAASLQQDLLFLQDQLGLRRGNLCVKTSLPPGPSTQELLQMQVSQEK
EQNENVGQTLKKLSNLLKQALEQIPELQGIVQDWWEQPSQAALPEEICQGLSLPQCQLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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