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Report for CCDS17848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17848.1 Public Mus musculus 3 Ints12 23 108 98 CCDS HistoryNCBI Gene:71793Re-query CCDS DB by CCDS ID:17848.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029650.8 ENSMUSP00000029650.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029650.8Link to Ensembl Protein Viewer:ENSMUSP00000029650.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029650Re-query CCDS DB by Protein ID:ENSMUSP00000029650
Original member Current member NCBI NM_027927.4 NP_082203.1 Accepted alive Link to Nucleotide Sequence:NM_027927.4Link to Protein Sequence:NP_082203.1Re-query CCDS DB by Nucleotide ID:NM_027927Re-query CCDS DB by Protein ID:NP_082203Link to BLAST:NP_082203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082203.1 461 Q9D168 461 100% 0 0

Chromosomal Locations for CCDS 17848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133096757 133096912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133098410 133098562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133100623 133100807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133102357 133102516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133106939 133107085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133108835 133109419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGCTGCTACTGTGAACTTGGAACTTGATCCCATTTTTCTGAAAGCACTAGGTTTCTTACATTCAAAGA
GTAAAGATTCTGCTGAAAAGCTAAAAGCGTTGCTTGATGAGTCTTTGGCTCGGGGCATTGATTCCAGTTA
CCGTCCAACTCAAAAGGATGTGGAACCACCCAAAATTTCAAGTACAAAATCACTTTCTATTAAGCAAGAG
CCCAAAACATCATCTAGCCTCCCTTCCGGCAGTAGTAACGGCAAAGTCCTCACAGCTGAGAAGATAAAGA
AGGAGGCTGAGAAGAGACCTGCTGATAAGATGAAAGATGTCACTGAAGGAATTGATGTTCCAAAGAAACC
TAGACTGGAGAAGCCAGAGACACGATCCTCTCCCATTACTGTCCAAACCAGCAAGGATTTGAGTATGGCT
GACCTCTCCAGCTTTGAGGAGACTAGTGCTGATGACTTTGCCATGGAGATGGGGTTGGCCTGTGTTGTTT
GTAGACAAATGACCGTGGCATCTGGAAACCAACTGGTAGAATGTCAAGAGTGCCATAACCTCTACCACCA
AGACTGCCATAAGCCCCAGGTGACAGACAAAGAAGTGAATGACCCTCGCCTGGTGTGGTACTGTGCCCGG
TGCACTAGACAGATGAAGAGAATGGCTCAGAAAACTCAGAAGCCACCACAGAAACCAGCGCCCACTGTTG
TTTCTGTGACTCCAACTGTCAAGGATCCATTAGTCAAGAAGCCAGAAACCAAACTTAAACAAGAGACAAC
CTTCCTAGCATTCAAGAGAACCGAAGTTAAGCCATCCACGGTTATTTCAGGAAATTCTTCTAGTAACAAC
GTGTCCTCTTCAGTAACTAGTGGCCTAACTGGATGGGCAGCTTTTGCAGCCAAAACTTCTTCAGCTGGTC
CATCAACAGCAAAATTGAATTCAGCAGCACAAAACAGTAGTGGAAAACCTGCTGCCTCATCCTCTAACCA
GAAGCCTGTGGGTTTGACTGGTCTGGCAACATCATCCAAAGGTGGAATAGGTTCCAAAATAGGTTCTGGT
AACAGCACTAGCCCCTCTGTCCCGTTGAAACCGCTTCCACCACTAACCTTAGGCAAGACTGGCCTGAGTC
GCTCAGTGAGTTGTGATAACGTCAGCAAAGTGGGTCTTCCTAGTCCTAGTAGTTTAGTTCCTGGAGGCAG
CAGCCAATTGAGTGGGAATGGAAATAGTGCTACAACGGGGCCCAGTGGAAGTACCACCAGCAAAGCCACA
TCAGAGACCAGCAGCAGTACCTCAGCATCTCTTAAAGGTCCAACTTCTCAAGAATCACAGCTCAACGCAA
TGAAGCGATTACAGATGGTCAAGAAGAAAGCTGCCCAAAAGAAACTCAAGAAGTAA

Translation (461 aa):
MAATVNLELDPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPTQKDVEPPKISSTKSLSIKQE
PKTSSSLPSGSSNGKVLTAEKIKKEAEKRPADKMKDVTEGIDVPKKPRLEKPETRSSPITVQTSKDLSMA
DLSSFEETSADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR
CTRQMKRMAQKTQKPPQKPAPTVVSVTPTVKDPLVKKPETKLKQETTFLAFKRTEVKPSTVISGNSSSNN
VSSSVTSGLTGWAAFAAKTSSAGPSTAKLNSAAQNSSGKPAASSSNQKPVGLTGLATSSKGGIGSKIGSG
NSTSPSVPLKPLPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVPGGSSQLSGNGNSATTGPSGSTTSKAT
SETSSSTSASLKGPTSQESQLNAMKRLQMVKKKAAQKKLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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