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Report for CCDS19975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19975.1 Public Mus musculus 6 Cpa4 23 108 98 CCDS HistoryNCBI Gene:71791Re-query CCDS DB by CCDS ID:19975.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049251.5 ENSMUSP00000048558.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049251.5Link to Ensembl Protein Viewer:ENSMUSP00000048558.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049251Re-query CCDS DB by Protein ID:ENSMUSP00000048558
Original member Current member NCBI NM_027926.3 NP_082202.1 Accepted alive Link to Nucleotide Sequence:NM_027926.3Link to Protein Sequence:NP_082202.1Re-query CCDS DB by Nucleotide ID:NM_027926Re-query CCDS DB by Protein ID:NP_082202Link to BLAST:NP_082202.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082202.1 420 Q6P8K8 420 100% 0 0

Chromosomal Locations for CCDS 19975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30568394 30568461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30573863 30573944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30574364 30574498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30576048 30576143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30579577 30579678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30580897 30581001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30581644 30581754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30583586 30583676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30585009 30585208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30585908 30585992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30590780 30590967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGAAGTGGCTACTGTTCTTTGGGGCCCTGATTGGGGCAGGCATCTGCGGCCGAGATAAATTCTTTGGGG
ACCAAGTTTTTAGGATTAATGTCAGAAATGGAGACGAGATCAGAAAACTGACTGAGCTAGTGAATTCTGA
CCACTTAAAGCTCAGTGTCTGGAAATCTCCCTCCACTTTTGATCGGCCCGTGGATATTCTCGTCCCTTCT
GTCAGCTTGCTCCCAGTCAAGTCCTTCCTGAAGTCCCAGGGTTTAGACTACTCCGTGACAATTGAGGACC
TCCAGGCCCTTTTAGATAACGAAGATGAAGAAATGCAGCACAATGAAGGGATAGAGCGGAGTGGTGACTT
CAACTACGGAGCTTACCATCCCCTGGAGGCTATTTACCACGAGATGGACAGTATTGCCACAGACTTTCCT
GAGCTGGTGAGCAGAGTGAAGATTGGAGAGACATTTGAAAAGCGGCCCATGTATGTTCTAAAGTTCAGCA
CGGGAGGAGGCAAGAAGCGGCCAGCCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACA
GGCCACAGCCATCTGGACAGCGAGGAAGATTGTAACTGATTATAAAAAGGACCCGGCTATCACCTCCATC
TTGAAGAAAGTGGATATTTTCTTGTTGCCCGTGGCCAATCCTGATGGATATGTGTACACGCAAAGCCAGA
ACCGATTATGGAGAAAGACGCGGTCCCGGAACCCAGGAAGCCGCTGTGTTGGAGCCGATCCAAACAGAAA
CTGGAATGCTAGTTTTGCAGGAGAGGGGACCAGTGATAACCCTTGCTCTGAAGTGTACCATGGCTCCCAC
CCCAATTCTGAAGTGGAGGTGAAATCGGTGGTGGATTTCATTCAAAAGCATGGGAACTTCAAATGCTTCA
TTGACCTGCATAGCTACTCACAGCTGCTGATGTATCCCTATGGGTACACAGTCAAGAAGGCCCCGGATGC
TGAGGAGCTGGACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTCTCGGGCACTAAGTACCGA
GTGGGCCCAACTTGCACCACCGTCTATCCAGCTAGTGGGAGCAGCGTTGACTGGGCATACGACAATGGCA
TCAAGTATGCTTTCACATTTGAGCTGAGAGACACTGGGTACTACGGCTTCCTCTTGCCAGCCAGCCAGAT
CATCCCCACCGCGGAGGAGACCTGGCTAGGGCTGAAGACCATCATGGAACATGTTCGGGACCACCTCTAC
TAG

Translation (420 aa):
MKWLLFFGALIGAGICGRDKFFGDQVFRINVRNGDEIRKLTELVNSDHLKLSVWKSPSTFDRPVDILVPS
VSLLPVKSFLKSQGLDYSVTIEDLQALLDNEDEEMQHNEGIERSGDFNYGAYHPLEAIYHEMDSIATDFP
ELVSRVKIGETFEKRPMYVLKFSTGGGKKRPAIWLNAGIHAREWISQATAIWTARKIVTDYKKDPAITSI
LKKVDIFLLPVANPDGYVYTQSQNRLWRKTRSRNPGSRCVGADPNRNWNASFAGEGTSDNPCSEVYHGSH
PNSEVEVKSVVDFIQKHGNFKCFIDLHSYSQLLMYPYGYTVKKAPDAEELDDVARNAAQALASLSGTKYR
VGPTCTTVYPASGSSVDWAYDNGIKYAFTFELRDTGYYGFLLPASQIIPTAEETWLGLKTIMEHVRDHLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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