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Report for CCDS23452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23452.1 Public Mus musculus 9 Inhca 23 108 98 CCDS HistoryNCBI Gene:71775Re-query CCDS DB by CCDS ID:23452.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035163.9 ENSMUSP00000035163.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035163.9Link to Ensembl Protein Viewer:ENSMUSP00000035163.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035163Re-query CCDS DB by Protein ID:ENSMUSP00000035163
Original member Current member NCBI NM_027918.2 NP_082194.1 Accepted alive Link to Nucleotide Sequence:NM_027918.2Link to Protein Sequence:NP_082194.1Re-query CCDS DB by Nucleotide ID:NM_027918Re-query CCDS DB by Protein ID:NP_082194Link to BLAST:NP_082194.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082194.1 700 Q9DBD0 700 100% 0 0

Chromosomal Locations for CCDS 23452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103250628 103250662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103251791 103251977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103254640 103254824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103256565 103256629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103259370 103259511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103263030 103263185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103266203 103266259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103267632 103267722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103268312 103268454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103269612 103269783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103272487 103272665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103274941 103274996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103277456 103277603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103279373 103279534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103281035 103281143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103282495 103282667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103288181 103288223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGAGGCTGCTCATCTGCGCCCTTCTATGCTTGGGGACCCTAGGGCTGTGCCTGGCTCTTCCTGAGAAGA
CCATACGATGGTGCGTTGTGTCAGATCATGAGGCCACTAAGTGTTCTAGTTTCCGTGACAATATGAAGAA
AGTCCTTCCTGCAGGTGGCCCAGCTGTTACCTGTGTAAGGAAAATGTCTCACCCTGAGTGCATCCGGGAC
ATCTCGGCCAATAAAGTAGATGCTGTGACTGTTGACGGAGCTTTGGTGGCTGAAGCTGACCTGCCTCACC
ACAGCCTGAAACCTATCATGGCAGAATACTATGGATCAAAAGATGATCCAAAAACCCATTATTATGTTGT
GGCCATGGCAAAGAAGGGAACAGGCTTCCAACTGAACCAGCTCCGGGGCAAGAAGTCCTGCCATACTGGC
CTGGGCTGGTCTGCTGGGTGGTACGTTCCCCTCAGCACCCTGCTTCCTTCTGGCTCTCGGGAAACAGCGG
CAGCCACGTTCTTCTCCAGCAGCTGTGTGCCCTGTGCGGATGGAAAGATGTTCCCCAGCCTGTGCCAACT
GTGTGCGGGGAAGGGGACAGACAAGTGTGCCTGCTCCTCCCGGGAACCATACTTTGGCTCCTGGGGAGCC
TTAAAATGTCTGCAGGATGGCACGGCGGATGTGAGCTTCGTGAAGCACCTGACAGTGTTTGAGGCCATGC
CAACAAAGGCCGACAGGGACCAATACGAGCTGCTCTGCATGGACAACACCCGCAGGCCAGTGGAGGAATA
TGAACAGTGCTACCTGGCCCGGGTCCCTTCTCATGTTGTGGTGGCTCGAAGTGTGGATGGCAAGGAGGAC
TCCATCCAAGAGCTTCTCAGAGTGGCCCAGGAACATTTTGGAAAAGACAAGTCATCACCCTTCCAGCTCT
TTGGCTCCCCTCACGGGGAGGACCTGCTGTTTACTGATGCTGCTCATGGGCTCCTAAGGGTCCCTCGAAA
GATAGACATCAGTCTGTACTTGGGATATGAGTTTCTTTCTGCCTTTCGGAATCTTAAAAGAGGTCTGGAA
GACTCCCAGAGGGTGAAGTGGTGTGCAGTGGGCCAGCAGGAGAGGACCAAATGTGACCAGTGGAGTGCTG
TGAGCGGTGGTGCTTTGGCGTGTGCCACGGAGGAGACCCCTGAGGACTGCATCGCTGCCACCATGAAAGG
AGAAGCGGACGCCATGAGCCTGGATGGAGGGTTTGCCTACGTCGCAGGCCACTGCGGCCTGGTACCTGTC
CTGGCAGAGAACTACTTGTCTACCCACAGCAGTGGGAGGCTGGGGTCTAAGTGTGTGAACGCACCTTTGG
AAGGTTATTATGTTGTGGCTGTGGTTAAGAAATCGGATGTTGGCATCACCTGGAAATCTCTGCAAGGCAA
GAAGTCCTGCCACACGGCCGTTGGCACTTCTGAAGGCTGGAACGTCCCCATGGGTTTAATATACAACCAA
ACTGGGTCTTGCAAATTTGATGCATTCTTCAGTCGCAGCTGTGCCCCAGGGTCTGACCCTGACTCTCCTC
TCTGCGCTCTGTGTGTTGGGGGTAACAACCCAGCCCACATGTGTGCTGCCAACAACGCTGAGGGGTATCA
CGGCTCCAGCGGAGCTCTCAGGTGTCTGGTTGAGAAGGGGGACGTGGCCTTCATGAAGCACCCTACAGTT
CTACAGAACACTGATGGAAAGAACCCTGAGCCTTGGGCTAAGGGTCTGAAACACGAAGACTTTGAGCTGC
TCTGCCTTGATGGCACCAGGAAGCCTGTGACTGAGGCTCAGAGCTGCCACCTGGCCAGAGTGCCAAACCG
TGCTGTGTTCTCCAGGAAAGATAAGGCTGACTTTGTTCGAAGAATACTCTTCAACCAACAGGAGCTCTTT
GGAAGAAATGGATTTGAATATATGATGTTCCAGATGTTTGAATCCTCAGCTAAGGACCTGCTTTTCAGTG
ATGACACAGAATGTTTATCTAACCTTCAGAACAAAACAACATATAAAACATACCTAGGACCACAGTATCT
TACCTTGATGGATAACTTTAGACAGTGCTTGTCCTCTGAACTGCTGGATGCCTGCACATTTCATAAATAT
TAA

Translation (700 aa):
MRLLICALLCLGTLGLCLALPEKTIRWCVVSDHEATKCSSFRDNMKKVLPAGGPAVTCVRKMSHPECIRD
ISANKVDAVTVDGALVAEADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGFQLNQLRGKKSCHTG
LGWSAGWYVPLSTLLPSGSRETAAATFFSSSCVPCADGKMFPSLCQLCAGKGTDKCACSSREPYFGSWGA
LKCLQDGTADVSFVKHLTVFEAMPTKADRDQYELLCMDNTRRPVEEYEQCYLARVPSHVVVARSVDGKED
SIQELLRVAQEHFGKDKSSPFQLFGSPHGEDLLFTDAAHGLLRVPRKIDISLYLGYEFLSAFRNLKRGLE
DSQRVKWCAVGQQERTKCDQWSAVSGGALACATEETPEDCIAATMKGEADAMSLDGGFAYVAGHCGLVPV
LAENYLSTHSSGRLGSKCVNAPLEGYYVVAVVKKSDVGITWKSLQGKKSCHTAVGTSEGWNVPMGLIYNQ
TGSCKFDAFFSRSCAPGSDPDSPLCALCVGGNNPAHMCAANNAEGYHGSSGALRCLVEKGDVAFMKHPTV
LQNTDGKNPEPWAKGLKHEDFELLCLDGTRKPVTEAQSCHLARVPNRAVFSRKDKADFVRRILFNQQELF
GRNGFEYMMFQMFESSAKDLLFSDDTECLSNLQNKTTYKTYLGPQYLTLMDNFRQCLSSELLDACTFHKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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