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Report for CCDS40550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40550.1 Public Mus musculus 9 Raver1 23 108 98 CCDS HistoryNCBI Gene:71766Re-query CCDS DB by CCDS ID:40550.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115487.2 ENSMUSP00000111150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115487.2Link to Ensembl Protein Viewer:ENSMUSP00000111150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115487Re-query CCDS DB by Protein ID:ENSMUSP00000111150
Original member Current member EBI ENSMUST00000217359.1 ENSMUSP00000151195.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217359.1Link to Ensembl Protein Viewer:ENSMUSP00000151195.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217359Re-query CCDS DB by Protein ID:ENSMUSP00000151195
Original member Current member NCBI NM_027911.4 NP_082187.1 Accepted alive Link to Nucleotide Sequence:NM_027911.4Link to Protein Sequence:NP_082187.1Re-query CCDS DB by Nucleotide ID:NM_027911Re-query CCDS DB by Protein ID:NP_082187Link to BLAST:NP_082187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082187.1 748 Q9CW46-1 748 100% 0 0

Chromosomal Locations for CCDS 40550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21075350 21075496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21075585 21075668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21075964 21076107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21076567 21076641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21079209 21079514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21079601 21079812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21080084 21080171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21080705 21080817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21080975 21081104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21081184 21081375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21086245 21086714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21090250 21090316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21091759 21091977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGCGGCCGACGTGTCCGTTACTCACCGGCCGCCGCTGAGCCCAGAGGCGGAGGCCGAAGCGGAAACTC
CCGAGACCGTCGATCGCCGGGCGCCCGAACAAGAGTTGCCGCCGCTCGATCCGGAAGAGATCCGGAAACG
CCTGGAACACACTGAGCGCCAGTTCCGTAACCGCCGCAAGATACTGATCCGAGGCCTCCCGGGGGACGTG
ACCAACCAGGAAGTACATGACCTCCTGAGCGACTACGAACTCAAGTACTGTTTCGTGGACAAATACAAAG
GGACAGCTTTTGTGACTCTGCTGAATGGGGAGCAGGCTGAAGCTGCCATCAACACCTTCCACCAGAGCCG
CCTTCGAGAGCGGGAGCTGTCAGTTCAGTTGCAGCCTACCGATGCTCTGCTGTGCGTGGCCAACCTACCA
CCTAGTCTGACACAGGCACAATTTGAAGAGCTGGTGCGGCCCTTTGGCAGCCTGGAGCGCTGCTTCCTAG
TGTACAGTGAGCGCACTGGCCACTCTAAAGGATATGGCTTTGCAGAGTACATGAAGAAAGACTCAGCAGC
CAGGGCCAAGTCTGACTTGCTGGGCAAGCCACTGGGCCCACGCACACTGTATGTGCACTGGACAGATGCT
GGGCAGCTGACCCCTGCATTGTTGCACTCTCGATGCCTCTGTGTGGACCACCTGCCACCTGGCTTCAGTG
ATGTGGATGCCCTGCGCCGGGCTCTGTCAGTGGTCTATACCCCCACCTTCTGTCAGCTGGCATGTGGCCA
GGATGGGCAGCTAAAGGGCTTCGCGGTGCTGGAGTACGAGACAGCAGAGATGGCAGAGGCAGCACAAGAA
CGGGCAGATGGCCAGGCCCTGGGTGACAGCCACCTACGTGTGTCTTTCTGTGCCCCAGGTCCCCCTGGCC
GCAGCATGCTAGCAGCACTCATTGCTGCCCAGGCCACGGCTCTTAATCGAGGCAAGGGACTCCTGCCTGA
GCCAAATCTTCTGCAGCTGTTGAACAACCTGGGCCCATCTGCATCCCTCCAGCTGCTCCTCAACCCTCTG
CTTCATGGGGGAGCCAGTGGCAAGCAGGGTCTCCTGGGTGCGCCCCCTGCTATGCCACTGCTCAGCGGGC
CTGCCCTGTCCACTGCACTGCTGCAGCTAGCCCTGCAGAGCCAGAGCCAGAACCAGAGCCAGGGTCAGAA
GAAGCCTGGGATCCTGGGCGACTCACCTCTGGGTACCCTCCAGGCCGGGGCCCAACCTTCCAACTCCCTC
CTTGGGGAGCTGTCTGCAGGGGGGGGCCTAGCCCCGGAACTGCCGCCCCGCCGAGGGAAGCCACAACCCT
TACTACCACCATTGCTGGGTCCCTCTGGGGGTGACCGGGAGCCCATGGGTCTGGGTCCCCCAGCAACCCA
GCTCACTCCACCCCCAGCCCCTGTGGGGCTCCGAGGCTCCAACCATAGAGGCCTCCCAAAGGACAGTGGG
CCCCTGCCAACGCCCCCTGGGGTCTCACTGCTGGGGGAGCCCCCAAAGGACTACCGCATCCCCCTCAACC
CCTACCTGAATCTACACAGCCTGCTTCCATCCAGTAACCTGGCAGGCAAGGAGACCCGGGGCTGGGGAGG
CTCTGGGAGAGGCCGCCGCCCAGCTGAGCCCCCCTTGCCTAGCCCTGCAGTTCCTGGTGGAGGCAGTGGT
AGCAACAATGGCAACAAAGCCTTCCAAATGAAGTCCCGCCTGCTCAGCCCCATCGCCAGCAACCGCCTGC
CCCCTGAGCCAGGGCTGCCTGACAGCTATGGCTTTGATTATCCCACAGATGTGGGACCTAGACGACTCTT
CTCCCACCCTCGGGAACCAACCTTAGGGGCTCATGGCCCCAGCCGACACAAGATGTCCCCCCCACCTAGC
AGCTTCAATGAGCCCCGAAGTGGTGGAGGCAGTGGGGGACCCCTCTCTCATTTTTACTCTGGCTCACCCA
CCTCCTACTTCACCAGTGGCCTACAGGCTGGCCTCAAGCAGAGCCACCTGAACAAGGCTGTTGGTTCCTC
TCCAATGGGCTCCAGTGAAGGGCTCCTGGGCCTGGGCCCTGGGCCCAATGGTCACAGTCACCTGCTGAAG
ACCCCACTGGGTGGCCAGAAACGCAGTTTTTCCCACCTGCTGCCCTCACCTGAGCCCAGCCCAGAGGGCA
GCTACGTGGGCCAGCACTCCCAGGGCCTCGGCGGCCACTACGCGGACTCCTACCTGAAGCGGAAGAGGAT
TTTCTAA

Translation (748 aa):
MAADVSVTHRPPLSPEAEAEAETPETVDRRAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDV
TNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLP
PSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA
GQLTPALLHSRCLCVDHLPPGFSDVDALRRALSVVYTPTFCQLACGQDGQLKGFAVLEYETAEMAEAAQE
RADGQALGDSHLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL
LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKKPGILGDSPLGTLQAGAQPSNSL
LGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPPPAPVGLRGSNHRGLPKDSG
PLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRPAEPPLPSPAVPGGGSG
SNNGNKAFQMKSRLLSPIASNRLPPEPGLPDSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPS
SFNEPRSGGGSGGPLSHFYSGSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLK
TPLGGQKRSFSHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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